Streptomyces coeruleorubidus: CP976_35435
Help
Entry
CP976_35435 CDS
T07302
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scoe
Streptomyces coeruleorubidus
Pathway
scoe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CP976_35435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scoe03400
]
CP976_35435
Enzymes [BR:
scoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CP976_35435
DNA repair and recombination proteins [BR:
scoe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CP976_35435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QEV28899
UniProt:
A0A5J6I9S4
LinkDB
All DBs
Position
7687614..7688543
Genome browser
AA seq
309 aa
AA seq
DB search
MSGGDGTRRVRAGRRTVEVHRPDKVLFPGGGDAKEYTKGDLVDYHRAVAPFMLPHLRGRP
LMLERYPDGLDGPRFMQKNTPDHYPEWITRVEVAKEGGTVRHVVCDDTATLLYLADQAGI
TLHRWLSRADSVDHPDRLVFDLDPAEDDFDAVREAARLLGELLDELELPSALMTTGSRGL
HVIVPLNGRHDFDEVRSFARDVADTLADAHPDRLTTAARKKDRGERLYLDVQRNAYAQTA
VAPFTVRPRPGAPVATPITWDRLDDPELHARRWTIADAVEQARTNPWSGLLNRGRALGPA
RRRLNALRG
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggcggcgacggcacgcgcagggtgcgggcgggccgccgcaccgtggaggtccac
cggccggacaaggtgctcttccccggcggtggggacgccaaggagtacaccaagggcgat
ctggtggactaccaccgggccgtcgcgcccttcatgctgccgcacctgcgcggccgtcca
ctgatgctggagcggtacccggacgggctcgacggcccgcggttcatgcagaagaacacc
ccggaccactacccggagtggatcacccgcgtcgaggtggccaaggagggcggcaccgtc
cgccacgtcgtctgcgacgacaccgccaccctcctctatctggccgaccaggccggcatc
acgctgcaccgctggctctcccgcgccgacagcgtcgaccaccccgaccggctggtcttc
gacctggatccggcggaggacgacttcgacgccgtgcgcgaggccgcccggctgctgggg
gagctgctggacgagctggagctgccctcggcgctgatgaccaccggatcacgcgggctg
cacgtgatcgtgccgttgaacggccggcacgacttcgacgaggtgcgctccttcgcccgg
gacgtggccgacaccctcgccgacgcccaccccgaccggctgaccaccgccgcccgcaag
aaggaccgcggggagcggctctacctcgacgtgcagcgcaacgcctacgcgcagaccgcc
gtcgcgcccttcacggtccggccccggccgggtgcccccgtggcgaccccgatcacctgg
gaccggctggacgacccggagctgcacgcccgccgctggaccatcgccgacgccgtggaa
caggcccgcaccaacccctggtcgggcctgctgaaccgcggccgggcgctgggcccggcc
cggcggcggctgaacgccctgcgcggctga
DBGET
integrated database retrieval system