Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCAT_5459
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Entry
SCAT_5459 CDS
T01646
Name
(GenBank) conserved protein of unknown function
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sct
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Pathway
sct03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCAT_5459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sct03400
]
SCAT_5459
Enzymes [BR:
sct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCAT_5459
DNA repair and recombination proteins [BR:
sct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SCAT_5459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CCB78147
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All DBs
Position
5868101..5868997
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AA seq
298 aa
AA seq
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MPDRQAVEVDGHRLVLVNLDRLLFPVSGHTKAQLLHYYAQVAEVLLPHATGRPASFVRAP
DGPGGQTWYAKRPPPGLPDWVTLAEVPGSEGPAPHVVVDSTAALMAMANLAAFEVHVPQW
TARTGPDGHDRLVLDLDPGPGADLVLCCTVAQRLRQMLADDGLTAYPVSSGSKGLHLYAP
LEPAPERAVSGYARSLAQRMQAEHPGLVTASMDRSIRPGKVFIDWSQNATHKTTACPYTL
RLHERPRVAAPVGWDEIAGCAAPERLVLSPEQVVERVARLGDPLAELAARTHAAPLPR
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaccggcaggccgtggaggtggacggccaccgcctggtcctcgtcaacctcgac
cggctgctcttcccggtctcgggtcacaccaaggcccagctgctgcactactacgcgcag
gtggccgaggtgctgctgccgcacgccaccggccgtcccgcctccttcgtacgcgctccg
gacggccccggcgggcagacctggtacgccaaacggcccccgccgggactgcccgactgg
gtgacgctggccgaggtgcccggcagcgaggggcccgccccgcacgtggtggtcgactcc
accgccgcgctgatggcgatggccaacctcgccgcgttcgaggtgcacgtaccgcagtgg
accgcccggaccggcccggacggccacgaccggctcgtcctcgacctcgaccccggcccc
ggcgccgacctggtgctttgctgcaccgtggcgcagcggctgcggcagatgctcgccgac
gacgggctgaccgcctatccggtctcctccggttccaagggcctccatctgtacgcgccg
ctggagcccgccccggaacgcgcggtctccggctacgcccggtcgctggcccagcggatg
caggcggagcacccggggctggtgaccgcctccatggaccgctcgatccggcccggcaag
gtcttcatcgactggtcgcagaacgccacccacaagaccaccgcctgcccctacaccctg
cgcctgcacgaacgcccgagggtggccgcaccggtcggctgggacgagatcgccggctgc
gccgccccggaacggctggtgctctccccggagcaggtggtcgaacgggtggccaggctc
ggcgatccgctggcggaactggccgcccgcacccacgcggcgccgttgccgcggtga
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