Sorangium cellulosum So0157-2: SCE1572_27220
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Entry
SCE1572_27220 CDS
T02718
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scu
Sorangium cellulosum So0157-2
Pathway
scu03030
DNA replication
scu03410
Base excision repair
scu03420
Nucleotide excision repair
scu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCE1572_27220
03410 Base excision repair
SCE1572_27220
03420 Nucleotide excision repair
SCE1572_27220
03430 Mismatch repair
SCE1572_27220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scu03032
]
SCE1572_27220
03400 DNA repair and recombination proteins [BR:
scu03400
]
SCE1572_27220
Enzymes [BR:
scu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCE1572_27220
DNA replication proteins [BR:
scu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCE1572_27220
DNA repair and recombination proteins [BR:
scu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCE1572_27220
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCE1572_27220
MMR (mismatch excision repair)
DNA ligase
SCE1572_27220
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCE1572_27220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_pol_lambd_f
HHH
Motif
Other DBs
NCBI-ProteinID:
AGP37842
UniProt:
S4XXB3
LinkDB
All DBs
Position
7785980..7788004
Genome browser
AA seq
674 aa
AA seq
DB search
MTQAHHDEAGARNPLQGGLATDPKHKARIDELAERIEKYRASYYAGHPEISDAAFDALED
ELRALDPTHPVLARVGSASLITEWEKARHEIPMGSLNKVVSEDELRAWVARCDEILEKDG
HDGDGAAQPASSARASVADDLFVAEKLDGISIEVIYKGGKLVDAITRGDGEWGERITANV
ARMKGVPSRIRERGRLSVRGEIILRLSDMKRYFPGVTSPRNMAAGAAKRFDGQGAEHCTV
LFYDVAEHLEIPTCRARFAWLRELGFATPQTAHGDVEDVVKLYRRYSSELRAGLDYEIDG
LVVYVDSLHLQGLLGDVNRRPRGAVAFKFASPAKVTTVVAIQWDTGPSGRVTPVAIVEPV
ELAGANVRRASLHNAANVRSLGIGVGDEVLVSRRNDVIPYVEEVVEKRGPVALPPSVCPV
CSAPLVVEGEYLLCRNAACRALIEGRIHNWIDAIGALEWGDKLIEQVVAAGLVREPLDLY
KLTVKDIAELDRRGEKSATKCLDQLKSRLPLTLPIFLAALGIEGFAIQTARLLVSAGYTT
IEKLLAAGEDELAGIPGLGAIKAASIVRGLRARSDEIARLLAGGIVPVAPEAEGPLAGLT
FCFTGAATRSRGELTHLVESNGGRVLNSVTKELNYLVLADVASASSKAVKARKYGTKLIT
EDDLDALIAERRGG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaggcacaccacgacgaggccggagcgcgcaatccgctgcagggcgggctcgcg
acggatccgaagcacaaggccaggatcgatgagctcgccgagcgcatcgagaaatacagg
gcgagctactacgcagggcacccggagatctcggacgccgcgttcgacgccctcgaggac
gagctccgcgccctggatcccacgcacccggtgctcgctcgggtcggctccgcctccctc
atcacggagtgggagaaggcgcggcacgagatcccgatgggctcgctcaacaaggtcgtc
tccgaggacgagctccgggcctgggtcgcccggtgcgacgagatcctcgagaaggacggg
cacgacggcgacggcgcggcgcagccggcgagctccgcccgcgcgagcgtggcggacgac
ctgttcgtcgcggagaagctcgacggcatctccatcgaggtcatctacaagggcggcaag
ctcgtcgacgccatcacccgcggcgacggcgagtggggcgagcggatcaccgcgaacgtc
gcgcggatgaagggcgtcccctcgcggatccgggagcggggacggctgtccgtgcgcggc
gagatcatcctccgcctctcggacatgaagcgctacttccccggcgtcaccagcccgcgc
aacatggccgcgggcgcggccaagcggttcgacggccagggggcggagcactgcacggtg
ctgttctacgacgtcgccgagcacctcgagatcccgacgtgccgggcgcgcttcgcgtgg
ctgcgcgagctcggcttcgcgacgccgcagaccgcgcacggcgacgtcgaggacgtcgtg
aagctctaccggcgctactcgagcgagctccgcgcgggcctcgactacgagatcgacggg
ctcgtcgtgtacgtggactcgctccacctccaggggttgctcggcgacgtcaaccggcgg
ccgcgcggcgccgtcgccttcaagttcgcgtcgcccgcgaaggtgacgacggtcgtggcg
atccagtgggacaccgggccgagcggtcgcgtcacgccggtggcgatcgtcgagccggtg
gagctcgccggcgccaacgtccggcgcgcgtcgctgcacaacgcggccaacgtgcggagc
ctcggcatcggggtgggcgacgaggtgctggtctcgcgccgcaacgacgtgatcccgtac
gtcgaggaggtcgtcgagaagcgcgggcccgtcgcgctcccgccgtcggtctgcccggtc
tgcagcgcgccgctcgtcgtcgagggcgagtacctgctctgccggaacgccgcgtgccgc
gccctcatcgaggggcgcatccacaactggatcgacgccatcggcgcgctcgagtggggc
gacaagctgatcgagcaggtggtggccgcgggcctcgtgcgagagccgctcgacctctac
aagctcacggtcaaggacatcgcagagctcgatcggcgcggcgagaagagcgccacgaag
tgcctcgaccagctgaagagccggctgccgctcacgctgccgatcttcctcgcggcgctc
ggcatcgaggggttcgcgatccagaccgcgcggctgctcgtgtccgccgggtacaccacg
atcgagaagctcctcgcggccggcgaggacgagctcgccggcatcccggggctcggcgcc
atcaaggccgcgagcatcgtccgcgggctgcgcgcccgcagcgacgagatcgcgcggctg
ctcgccggcggcatcgtgccggtcgcccccgaggccgaggggccgctcgccggcctcacg
ttctgcttcaccggcgcggccacgcgctcccgcggcgagctcacccacctcgtcgagtcg
aacggcggccgggtgctgaacagcgtcacgaaggagctcaactacctcgtcctcgccgac
gtggcgtccgcgtcgagcaaggcggtcaaggcgcggaagtacggcaccaagctcatcacc
gaggacgacctcgacgcgctcatcgccgagcgccgcggcggctga
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