Streptomyces cyaneogriseus: TU94_01705
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Entry
TU94_01705 CDS
T03687
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scw
Streptomyces cyaneogriseus
Pathway
scw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TU94_01705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scw03400
]
TU94_01705
Enzymes [BR:
scw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TU94_01705
DNA repair and recombination proteins [BR:
scw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TU94_01705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJP00430
UniProt:
A0A0C5FVF9
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All DBs
Position
401619..402599
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AA seq
326 aa
AA seq
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MDLPLIPPMLATPGSLPPAAQDARWAYETKQDGQRVVVYLPGDGSLLLRARSGQDITPAY
PELSPLATVLGTTPAVLDGEVLALDARGRASFQLLQSRMGLAHAPGRAARRAAAVPVHLV
LFDVMHLAGRSLVPLPYARRREELEGLELDGPSWSTPAALVGHGERALRATREHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMNSEDVVVGGWLPGKGRLSGLPGAVLVGQRAGGRLRYV
GGVGTGWSEAERAELAALLHAAATEVCPFDPVPRVPGARWVVPRLVGEVRYSTRTREGML
RQPSWLRLRPDLAPEESAADLPDDLA
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
gtggacctgccgctcatccccccgatgctcgccacgcccggctccctgccgcccgccgcg
caggacgcgcggtgggcctacgagaccaagcaggacggccagcgcgtggtggtctacctg
cccggcgacggaagcctgctgctgcgcgcccgctccggccaggacatcacgcccgcctac
ccggagctgtccccgctggccaccgtgctcggcaccacccccgccgtactggacggggag
gtcctggcgctggacgcgcgggggcgcgcgagcttccagctcctccagtcccggatgggg
ctggcccacgcccccggccgggcggcccggcgggcggcggcggtccccgtgcacctcgtg
ctgttcgacgtgatgcacctggcggggcgctccctcgtccccctcccctacgcgcgccgg
cgcgaggaactggaggggctggagctggacggcccctcctggtcgacgcccgcggcgctc
gtcgggcacggcgagcgggccctgcgcgccacccgcgagcacgggctggagggcctggtg
tgcaagcggctggactccgtgtacgagcccggggtgcgctcccgggcgtggatcaagatc
cgcaacatgaacagcgaggacgtggtcgtcggcggctggctgcccggcaagggacggctc
tcgggcctgccgggcgccgtgctggtcggccagcgggccggggggcggctgcggtacgtc
ggcggggtgggcaccggctggagcgaggccgagcgtgcggaactggccgcgctgctgcac
gccgccgcgaccgaggtgtgccccttcgatcccgtcccacgggtgccgggggcgcgctgg
gtggtgccccggctggtcggcgaggtccgctacagcacccgcacccgggaggggatgctg
cggcagccgtcctggctgcggctgcgtcccgacctggcgccggaggagtcggcggccgac
ctcccggacgacctggcctga
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