Streptomyces cyaneochromogenes: EJ357_31390
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Entry
EJ357_31390 CDS
T06811
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scya
Streptomyces cyaneochromogenes
Pathway
scya03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EJ357_31390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scya03400
]
EJ357_31390
Enzymes [BR:
scya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EJ357_31390
DNA repair and recombination proteins [BR:
scya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EJ357_31390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AZQ37404
UniProt:
A0A3Q9EWB9
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All DBs
Position
complement(6858043..6858924)
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AA seq
293 aa
AA seq
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MTPITEVEGRRLALSNLEKVLYPATGFTKGEVLHYYATTADVLLPHLRDRPVSFLRYPDG
PDGQVFFTKNVPPGTPEWVTTEEVPRVEGPARMVFVQDLASLMWAANLVTEFHTPQWVID
APGEADRLVFDLDPGSPATVVECCEAALWLRERLAADGIEAYAKTSGSKGLHLTAAIRPA
PSQQATDYAKELAVEAEKALPRLVIHRMTKSLRPGKVFVDWSQNAARKTTATPYTLRARP
EPTVSAPVTWEEVQDCRSPAALTFLAPDLAPRLQDYGDLLAPLLDGDRAGTLP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacagaggtggaggggcgacggctcgcgctcagcaacctggagaaggtg
ctgtatccggcgaccggcttcaccaagggcgaggtgctgcactactacgccaccaccgcc
gacgtcctgctgccgcatctgcgggaccggccggtgtccttcctccgctatcccgacggc
ccggacggccaggtgttcttcaccaagaacgtcccgccgggcacccccgagtgggtcacc
accgaggaggtgccccgtgtcgaggggccggcgcgcatggtgttcgtgcaggacctcgcg
agcctgatgtgggccgccaacctcgtcaccgagttccatacgccccagtgggtgatcgac
gcgccgggcgaggccgaccgcctggtcttcgacctcgacccgggctcacccgcgaccgtg
gtcgagtgctgcgaggccgccctctggctgcgcgagcggctggccgccgacggcatcgag
gcgtacgccaagacctccggctcgaagggcctgcatctcaccgctgccatccggccggcc
ccttcccagcaggccaccgactacgccaaggaactcgccgtggaggccgagaaggccctg
ccccggctcgtgatccaccggatgacgaagagcctgcgccccggaaaggtcttcgtcgac
tggagccagaacgccgcccgcaagacgacagccacgccgtacaccctgcgggcccgcccc
gagccgacggtatccgccccggtgacctgggaggaggtacaggactgccgctcccccgcg
gccctgaccttcctggcccctgacctggccccacggctgcaggactacggcgacctgctg
gcgccgctgctggacggggacagggcgggcacactgccctga
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