Streptomyces cyanogenus: S1361_32365
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Entry
S1361_32365 CDS
T07416
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scyg
Streptomyces cyanogenus
Pathway
scyg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
S1361_32365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyg03400
]
S1361_32365
Enzymes [BR:
scyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
S1361_32365
DNA repair and recombination proteins [BR:
scyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
S1361_32365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QTE02072
LinkDB
All DBs
Position
7226920..7227855
Genome browser
AA seq
311 aa
AA seq
DB search
MSPGDARTLRAGRRTVEIRRPGKVLFPGGGGTKEYTKGDLADYYRSVAPYLLPHLRGRPL
TLERCPDGLEGQRFLQKNTPEHYPEWITRVEVAKEGGTVTHVVCDDTATLLYLADQACVT
LHRWLSRTDRAGGPDHPDRLVFDLDPDGDDFATVRDAAHWMRELLDELGLPAAPMTTGSR
GLHLVVPLDGRHDFDEVRRFAHDVAELAAARHPDRLTTAARKQDRADRLYLDVQRNGYAQ
TAVTPYSLRARPGAPVAVPLAWKQVDDPALDARRWSIADAVDQARTEPWGDLPHRGRSLD
PARRRLDDMRS
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgagccccggcgacgcccggaccctgcgggcgggccgccgcaccgtggagatacggcgg
ccggggaaggtgctcttccccggcggcgggggcacgaaggagtacaccaagggcgacctc
gccgactactaccggtccgtcgcgccgtatctgctgccgcacctgcgcggccgcccgctg
acgctggaacgctgtccggacggcctggagggccagcggttcctgcagaagaacaccccg
gagcactacccggagtggatcacccgtgtcgaggtcgccaaggagggcggcacggtcacc
cacgtcgtgtgcgacgacaccgccaccctcctctacctcgccgaccaggcctgcgtcacc
ctgcaccgctggctctcccggaccgaccgggccggcggccccgaccaccccgaccggctg
gtcttcgacctcgatccggacggtgacgacttcgccaccgtccgggacgcggcccactgg
atgcgtgagctgctggacgagctgggcctgcccgcggcgcccatgaccaccggctcgcgc
ggcctgcacctcgtcgtcccgctggacggccgccacgacttcgacgaggtgcggcggttc
gcccacgacgtcgccgagctggccgccgcccggcaccccgaccggctcaccaccgcggcc
cgcaagcaggaccgtgcggaccgcctctacctggatgtgcagcgcaacggctacgcccag
accgccgtcaccccctacagcctccgcgcccgcccaggcgccccggtcgccgtgccccta
gcctggaagcaggtggacgatccagcgctggacgcccgccggtggagcatcgccgacgcc
gtcgaccaggcccggacggagccgtggggcgacctgccccaccgtggccgctcgctggat
ccggcccggcgccgtctcgatgacatgcgctcctga
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