Streptomyces cynarae: N8I84_32380
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Entry
N8I84_32380 CDS
T09435
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scyn
Streptomyces cynarae
Pathway
scyn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N8I84_32380 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyn03400
]
N8I84_32380 (ligD)
Enzymes [BR:
scyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N8I84_32380 (ligD)
DNA repair and recombination proteins [BR:
scyn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N8I84_32380 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UXY22880
LinkDB
All DBs
Position
unmamed1:7139750..7140685
Genome browser
AA seq
311 aa
AA seq
DB search
MSSTRTVRAGRRTVEVHRPDKVLFPGARDGGDGDGKEYTKADLVEYYRSVAPFMLPHLRG
RPLMLERHPDGVDGPRFMQKNTPEHYPEWIRRVELPKEGGTVCHTVCDDTATLLYLADQA
CLTLHRWLSRADRLQRPDRIVLDLDPADGDFGQVRAAARLVGELLDELRLPSGLMTTGSR
GLHVVVPISGDQDFDEARRFARDIADVLAAAHPDLLTTAARKKDRGDRLYLDVQRNAYAQ
TAVAPFTVRALPGAPVATPLSWGQLDDPALNARRWTVADAVDQARTDPWADVPPRGRSLA
RARRRLDDLRG
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcacgcggaccgtgcgggccggccgccgcacggtcgaggtgcaccggccggac
aaggtgctcttccccggcgccagggacggaggggacggggacggcaaggagtacaccaag
gccgacctcgtggagtactaccgatccgtcgcccccttcatgctgccgcacctgcgcggc
cggcccctgatgctggagcggcacccggacggcgtggacgggccccgcttcatgcagaag
aacaccccggagcactacccggagtggatccggcgcgtcgaactccccaaggagggcggc
accgtctgccacaccgtctgcgacgacaccgccaccctcctctacctcgccgaccaggcc
tgcctcaccctgcaccgctggctctcccgcgccgaccggctgcagcggcccgaccggatc
gtcctcgacctcgacccggcggacggcgacttcggccaggtgcgcgcagccgccaggctg
gtgggggagctgctggacgaactgcggttgccgtccggcctgatgaccaccggttcgcgg
ggcctgcacgtcgtcgtccccatcagcggcgaccaagacttcgatgaggcacggcggttc
gcgagggacatcgccgacgtcctcgccgccgcccaccccgacctgctcaccaccgccgcc
cgcaagaaggaccgcggcgaccgcctctacctcgacgtgcagcgcaacgcgtacgcgcag
accgcggtcgcccccttcaccgtacgcgcgctgccgggcgcaccggtcgccacgccgctg
tcctggggccagctggacgacccggctctgaacgcccgccgctggaccgtcgccgacgcg
gtggaccaggcccgcaccgacccctgggcggatgtgccgccccgggggcgttccctcgca
cgtgcccggcggcggctcgacgacctgcgcggttga
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