Streptomyces sp. CFMR 7: ABE83_14325
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Entry
ABE83_14325 CDS
T04074
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scz
Streptomyces sp. CFMR 7
Pathway
scz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABE83_14325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scz03019
]
ABE83_14325
03400 DNA repair and recombination proteins [BR:
scz03400
]
ABE83_14325
Enzymes [BR:
scz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABE83_14325
Messenger RNA biogenesis [BR:
scz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABE83_14325
DNA repair and recombination proteins [BR:
scz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABE83_14325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ALC28147
UniProt:
A0A0M4DSH2
LinkDB
All DBs
Position
complement(3501879..3503978)
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AA seq
699 aa
AA seq
DB search
MDVTGTVTGNGTDTDGNTGGGVGDGTGGAETEALRTLHRVFGYDAFRGEQGAVIEHVVAG
GDAVVLMPTGGGKSLCYQIPSLVRRGTGVVVSPLIALMQDQVDALRALGVRAGFMNSTQD
FDERRSMEAQFLAGELDILYLAPERLRLDSTLSLLARGEISVFAIDEAHCVAQWGHDFRP
DYLALSVLGERWPDVPRIALTATATDATHQEITRRLGMPEAKHFVASFDRPNIQYRIVPK
SDPKKQLLTFLQEEHAGDAGIVYCLSRNSTEKIAEYLTRNGIDAVPYHAGLDANTRAAHQ
SRFLREEGLVVVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGEPSTAWMA
YGLQDVVQQRKLIQGGEGDEAFRRRAAAHLDSMLALCETVQCRRAQLLTYFGQEPTAANC
GNCDTCLTPPETWDGTVVSQKLLSTVVRLKRERNQKFGAGQIIDILLGRKTAKVIQFDHD
QLSVFGIGEELSEAEWRGVVRQLLAQGLLAVEGEYGTLVLTDASATVLGREREVLLRKEP
KKPTTRSSSSSGSSRGAKGKAAAADLPPAAVPVFEALRAWRGATAKEQGVPAYVIFHDAT
LREIATVHPTSLAELGGISGLGEKKLATYGEGVLEVLAETSPGPTATEPPAPTPRPTATP
PRTKAPAAPPRADKAPAAPAAQQYSDPEFAWDEEPPEYE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaccgggacggtgaccggcaacgggaccgacaccgacggcaacaccggcggc
ggggtcggagacgggaccggcggggccgagaccgaggcactgcggacgctgcaccgggtc
ttcgggtacgacgcgttccgcggcgagcagggcgcggtcatcgagcatgtggtggccggc
ggcgacgccgtcgtgctcatgccgaccggcggcggaaagtccctctgctaccagatcccg
tccctggtcaggcgcggcaccggggtcgtcgtctccccgctgatcgccctcatgcaggac
caggtcgacgccctgcgggcgctcggtgtgcgggccggcttcatgaactccacgcaggac
ttcgacgagcgccgctcgatggaggcgcagttcctcgcgggcgagctggacatcctctat
ctggcgccggagcggctgcggctggactccaccctctccctgctggctcggggcgagatc
tccgtcttcgcgatcgacgaggcgcactgtgtggcccagtggggccacgatttccgcccg
gactatctggcgctctccgtgctcggtgagcggtggccggacgtcccgcgcatcgccctg
acggcgaccgccacggacgccacgcaccaggagatcacccgccgcctcgggatgccggag
gcgaagcatttcgtcgccagcttcgaccggcccaacatccagtaccggatcgtcccgaag
tccgacccgaagaagcagctcctcaccttcctccaggaggagcacgccggggacgcgggc
atcgtctactgcctctcgcgcaactccaccgagaagatcgcggagtatctgacccgcaac
ggcatcgacgccgtgccgtaccacgcgggcctggacgccaacacgcgcgccgcccaccag
tcgcgcttcctccgggaggagggcctcgtcgtcgtcgcgaccatcgccttcggcatgggc
atcgacaagccggacgtccgcttcgtcgcccacctggacctcccgaagtccgtcgagggg
tactaccaggagacgggccgcgcgggccgggacggggagccgtcgacggcctggatggcg
tacggactccaggacgtcgtccagcagcgcaagctcatccagggcggggagggcgacgag
gcgttccgccgccgggccgccgcccacctggactcgatgctggccctctgcgagacggtc
cagtgccgccgggcccagctgctgacctacttcggccaggagcccacggcggcgaactgc
ggcaactgcgacacctgcctgaccccgccggagacctgggacggcacggtcgtctcgcag
aagctgctctccacggtggtccgcctcaagcgcgagcggaaccagaagttcggcgcgggc
cagatcatcgacatcctgctgggccgcaagaccgccaaggtcatccagttcgaccacgac
cagctctccgtcttcggcatcggcgaggagctgtccgaggcggagtggcgcggcgtggtc
cgccaactgctggcccagggcctgctggcggtggagggggagtacggcacgctcgtcctc
accgacgccagcgccacggtcctcggccgcgagcgcgaggtcctgctccgcaaggagccc
aagaagcccacgacccgctcgtcgtcctcgtccggctcctcccgcggagccaagggcaag
gcggccgcggccgacctgccgcccgccgcggtcccggtcttcgaggccctgcgcgcctgg
cgcggcgcgacggccaaggagcagggcgtcccggcgtacgtgatcttccacgacgcgacg
ctgcgggagatcgccacggtccacccgacgtccctggcggagctgggcggcatcagcggc
ctgggcgagaagaagctcgcgacgtacggggagggcgtcctggaggtcctggcggagacg
tccccggggccgacggccacggagccaccggcccccacgccccgcccgacggcgaccccg
ccccgcacgaaggccccggctgccccgccccgcgccgacaaggcccccgctgcccctgcg
gctcagcagtacagcgaccccgagttcgcctgggacgaggagccgcccgagtacgagtga
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