Streptomyces sp. CFMR 7: ABE83_34900
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Entry
ABE83_34900 CDS
T04074
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scz
Streptomyces sp. CFMR 7
Pathway
scz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ABE83_34900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scz03400
]
ABE83_34900
Enzymes [BR:
scz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ABE83_34900
DNA repair and recombination proteins [BR:
scz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ABE83_34900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALC32370
UniProt:
A0A0M4ECV1
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All DBs
Position
unnamed:complement(72812..73744)
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AA seq
310 aa
AA seq
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MLATPGPLPSAAVEDRWAFEVKQDGQRAMIYLPGDGTVLLRARSGTDITSAYPELLPLAQ
ALGARSAVLDGEIVALDEQGRSDFERLQQRMGLAGAPARAARLAARVPVHLALFDVVHLD
GRPVTGVPYAERRELLEGLGLAGPGWSTPAAITGHGAQAWEMAKDAGLEGLIAKRLTSRY
EPGARSKAWVKIKVHRLADVVIGGWIPGRGRLTGLPGAVLVGERREGLLHYAGRVGTGWS
HTERTHLARLLQAAANDTCPFTQVPPVAGARWVLPQLVGEVRYTSRTHAGRLRHPSWHRL
RPDLTPDDLG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccacacccggcccgctgccgtcggcggctgtggaggaccggtgggcattcgag
gtgaagcaggacggccagcgggccatgatctacctgccgggcgacggcacggtcctcctg
cgcgcacgatcaggtacggacatcacctccgcctaccccgaactcctccccctcgcccag
gccctcggcgcgcggagcgccgtgctggacggggagatcgtggcgctcgacgagcagggc
cgcagcgacttcgagcgcctccagcagagaatggggctcgccggtgcccccgcccgggcc
gcgcgcctggcggcccgggtgccggtgcacctggcgctcttcgacgtcgtccacctcgac
ggccgccccgtgaccggcgtgccgtacgcggagcggcgggaactgctggaaggcctcggg
ctggccgggcccggctggtcgacgcccgcggcgatcaccgggcacggcgcccaggcctgg
gagatggccaaggacgccgggctggaggggctgatcgcgaaacggcttacctcccggtac
gagcccggggcacggtcgaaagcctgggtgaagatcaaggtccaccgcctcgccgatgtc
gtgatcggcgggtggatccccggacgcggacggctgaccggtctgccgggtgccgtcctg
gtcggcgagcggcgcgaggggctgctgcactacgcgggccgcgtcggcaccggctggagc
cataccgaacgcacccacctcgcccgactcctccaggccgcagccaacgacacctgcccc
ttcacacaggtgcccccggtggccggggcccggtgggtactcccccagctcgtcggcgag
gtccgctacacctcccgcacccacgccggacgcctgcgtcacccctcctggcaccggcta
cgccccgacctcacccccgacgacctgggctga
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