Sphingomonas daechungensis: H9L15_03935
Help
Entry
H9L15_03935 CDS
T07072
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sdh
Sphingomonas daechungensis
Pathway
sdh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
H9L15_03935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdh03400
]
H9L15_03935
Enzymes [BR:
sdh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
H9L15_03935
DNA repair and recombination proteins [BR:
sdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
H9L15_03935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QNP43806
LinkDB
All DBs
Position
748936..750378
Genome browser
AA seq
480 aa
AA seq
DB search
MIDAHRVTLAAEDDFDGWRDAARDLAESGVPPEAVVWQVSGSDGDLFGTEVRHEPGASFP
VPRSFIDVAKSVICHSDPERFSLLYAMLWKLRSNRGAMEDRADPLVDRLQKLAKEVRRDV
HKMHAFVRFREVAQPDGSERFVAFFEPDHHIVRHTAAFFVRRFTNMRWSILTPELSIHWD
GDKLSEGPGATRAEAPGGDPLEAMWKTYYASIFNPARLKIGAMLKEMPKKYWRNMPETSL
VQPLIASARMRELEMIDRAAAKSGLQEALEAERRIEPGSNLRASWEALMKEARGCTRCDL
YKHGTQTVFGEGPLDATIMFVGEQPGDQEDLAGRPFVGPAGQVFDEALEKAGIVRSEVYV
TNAVKHFKFEQRGKKRIHSKPNAGEIEACRWWIDQERTLIRPPVTVALGATAARSILDKV
VTISKVRGSPIPLAEGGECWVTVHPSFLLRIPEPERRVEERQKFVDDLKRIRDRAEKVAA
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatgcgcaccgcgtgacactcgcggccgaagacgatttcgacgggtggcgcgat
gccgccagggaccttgccgaatccggcgtcccgcccgaggccgtcgtctggcaggtcagc
ggatcggacggggacctgttcgggaccgaagtgcgtcacgaacccggcgccagctttccg
gtgccaaggtcgttcatcgatgtcgcgaagagcgtgatctgccattccgacccggagcgc
ttctctttgctgtacgcgatgctctggaagttgcgctcgaaccgcggagccatggaagat
cgcgccgacccgttggtcgaccggcttcaaaagctggcgaaggaggttcgccgcgacgtt
cacaagatgcatgccttcgtgcgcttccgggaggttgcgcagcctgacgggagcgagcgc
ttcgtcgccttcttcgaacccgaccaccacatcgttcgccatacggccgccttcttcgtc
cgccgcttcaccaacatgcggtggtcgatcctgacgccggagctatcaatccactgggat
ggcgacaaacttagcgagggtcccggggcgacgcgtgccgaggcgcccggcggcgacccg
ctcgaggcgatgtggaagacctattacgcgtccatcttcaatcccgcgcggctcaagatc
ggcgccatgctgaaggagatgccgaagaaatattggcgcaacatgccggaaacctcgctc
gttcagccactgattgcgagcgcacgcatgcgggagttggagatgatcgaccgggccgcg
gcaaagtcagggcttcaggaggccctcgaggcagaacgccggatcgagccgggcagcaac
ctccgcgcctcatgggaagcgctgatgaaggaagcgcgcggctgcacgcgctgcgacctt
tacaagcacggcacgcaaacggtgttcggcgaaggcccgctcgatgcgaccatcatgttc
gtcggcgagcagccgggcgaccaagaggacctcgccggccgtcccttcgtcggtcccgcc
ggacaggtcttcgacgaagcgctcgagaaggccggaatcgtgcgttcggaggtctatgtc
accaatgcagtgaagcacttcaagttcgagcagcgcggcaagaagcgcatccactcgaag
ccaaacgccggggaaatcgaggcctgccgctggtggatcgaccaggagcgaaccttgatc
cgtccgcccgtcacagtggctctgggcgcgaccgccgcccgctcgatcctcgacaaggtc
gtgaccatcagcaaggtgcgcggctcaccgatcccgcttgccgagggcggcgaatgctgg
gtgacggtgcaccccagcttcctcctccgcatccccgagcccgaacgccgagtcgaggaa
cgccagaagttcgtcgacgacctaaaacgcatccgcgaccgcgcggaaaaggttgccgcc
tga
DBGET
integrated database retrieval system
