Seriola dumerili (greater amberjack): 111216978
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Entry
111216978 CDS
T05606
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111216978 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111216978 (exosc5)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111216978 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
111216978
NCBI-ProteinID:
XP_022594376
LinkDB
All DBs
Position
Unknown
AA seq
236 aa
AA seq
DB search
MTSSTLDRLLFLHGGGVMEVCGSSSVTLREFGCEQSLLSRPDGSASFIQGDTSVLAGVYG
PAEVKVSKEIYDRATLEVLIQPKVGLPSVRERSQEQCVRETCEASLLLSLHPRSSLTLIL
QVLHDDGSLLSCFLNAACMALMDAGLPMSCLFCGVTCAIDTDGQIITDPTAAQEKESRAL
MTFAIDSTERRVLMSSTKGSFSVHELQQCIAVSQKASEKIFQFYRDSVRRRYSKTL
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgacatcatccaccctcgacagactacttttcctccatggtggcggcgtgatggaggtg
tgcggttcttcaagtgttaccctgagagagtttggctgtgagcagagcttactgtctcga
cctgacggctcagcgtccttcatccaaggagacacaagtgtgttggctggagtgtatgga
ccagcggaggttaaggtcagcaaggagatctatgacagggcgaccctggaggtgttgata
cagcccaaagtgggactgccaagtgtcagggagcgatcacaggagcagtgtgtgcgagag
acctgcgaggcatctctgctcttgtcacttcatccccgctcctccctcactctcattctt
caggtgttgcacgacgatggttcactcttgtcctgcttcctgaatgccgcctgtatggct
ctcatggatgcaggcctgcctatgagttgcctgttctgcggagtgacctgtgccatcgac
acagacggtcagatcatcacagaccccactgcagctcaggagaaggaaagtcgagctttg
atgacctttgccattgacagcacggaacgcagagtattgatgtcgtcgaccaaaggatca
ttttcagtccatgagctgcagcagtgtatagcagtcagtcagaaagcatcagagaagatc
ttccagttctacagggactctgtcaggcggcgatactccaaaaccctctga
DBGET
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