Seriola dumerili (greater amberjack): 111222713
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Entry
111222713 CDS
T05606
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111222713 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdu03400
]
111222713 (lig4)
Enzymes [BR:
sdu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111222713 (lig4)
DNA repair and recombination proteins [BR:
sdu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111222713 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
111222713
NCBI-ProteinID:
XP_022602251
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MEGTSRSDAAGQLPVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIASWRKFHSALHK
DKPKTTDSFYPAMRLIVPSFERERMAYGIKENMLAKLYIDVLGLPKNGPEANKLLNYRAP
STSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAMNNASNQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPSVSL
SEVSIGLFSAFKPMLAGVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGASALEGSLTPYIHNVFKSHVVNCILDGEMMAYNSSTENFMQKGSKFDIKRLM
EDSELQTCFCVFDVLLVNDQKLGKETLKKRYETIQTVFTPVKGRIHLVPQTEARTVQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAIAEAPKPGEKPSLFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEAYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLHINDNELQKKKRKVAAKPKKVIGLIDHFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKAELEKGVARCGGIVVQNPGRDTYCVIAGMENMRVKNLILSN
QHDVVWPSWLLECLNQKEVVPWQPHHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLRE
VFGRIGSGGVAAAAAAAVDLAQVEQRYSWDDLPTSMFRPFTVYMDSYADIGDPETAIPAT
CLDIRALEFRYHGGTVVQELEEGVSHVIITEETRLLDFKTLRRRFRKKFKIVKDSWVTDS
IEAGYLMNDDNYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttccagaagtgacgctgctggccagctgcctgtcgcagcacaggttcct
ttccttcacctgtgtaccactttagagaaaatccagaagtctaaactccgtccagataaa
tccaagatccttggggatttcattgcatcatggaggaagtttcattctgccctccacaag
gacaagcccaaaacaacagactctttctacccagctatgcgcctcatagtcccctctttt
gaacgcgagcggatggcatatggcatcaaagagaacatgttagctaaactgtacatcgac
gtactaggccttccaaagaatggcccagaggccaataaactgctgaactaccgagctcca
tctacatcccaaggagaagctggagactttgcgggcatggcgtactttgtgctgaagaaa
cggtgcaccagccaaggcaacctcagcatcaaagaagtcaatgactttctggactcggtg
gccatgaacaacgccagcaatcagaaggatcttgtgaaaaagagtctcctgcacctcatc
acccagagctcggctctagagcaaaaatggctcatcagaatgatcctgaaggacatgaag
ctcggggtcagcaaagaaactgttctccaggttttccacccggacgctgctgagctctac
aatgtcaacacagacttgaacaaggtgtgccagcagctccacaacccgtctgtctcttta
agcgaagtctccattggactcttctctgccttcaagcccatgttggcaggtgtggctaac
atccgcaatgtggagaaacagatgggcaacagccccttttacatccagaccaagctggac
ggggagcgtattcagctgcacaaagatggagacgtgtacaaatactttagcaggaatgct
tttgagtacacgcagcagtttggagcatctgcacttgagggctcactaactccttacatc
cacaatgttttcaaaagccacgtcgtgaactgcatcctcgacggcgagatgatggcgtac
aactcaagcacagagaacttcatgcagaaagggagcaagttcgacatcaagaggctgatg
gaggactccgagttacagacgtgcttctgcgtgtttgacgtgttgttagtcaatgaccag
aagcttggcaaggaaacactgaagaaacgctatgagaccattcagacggttttcacccca
gtcaagggaaggattcacctggtgccacagaccgaagccagaaccgtgcaagaggtggtg
aacgccctcaatgacgccatagacagcagagaagaagggatcatggtgaaggatccgtta
tccatctacaaacctgacaagcgaggggagggatggctgaaaataaagccagaatacgtt
gatggattgatggatgagcttgacctgctgattgtcggtggctactgggggaaagggaga
cggggtggtatgatgtcccatttcttatgtgccattgctgaagctccaaagcctggcgag
aaaccttcacttttccacagcttctgccgcatcggctctggatacaccatgaaggagctg
tatgacctcggtttgaagctagccaagcactggaaagtgtaccggaagaacgacccgccg
gcgtccatcctgtgtggcacagagaagccagaagcctacatcgaaccctgcaactctgtc
atcatccaagtcaaggcggccgagatagtcgggagcgacatgtataaaaccaactgtacc
ctccgcttccccaggatcgagaagatccgtgatgacaaggagtggcaccagtgcatgact
ctggcagagctggatcagttccgcagcaaggcgtcggggaaactcgcctcgcgccacctt
cacatcaacgacaacgaactgcaaaagaagaagcgcaaggtggcagccaagcccaagaag
gtgatcgggctcatcgaccacttcaagcctcaggacctctccggggttaccaaggagacg
gatatgtttgaagatgtggagttctgcatcctgaacggcaccgaggatcaccccaaggcc
gagctggagaagggcgtggccaggtgtggaggaatcgtggttcaaaacccaggacgggac
acctactgcgtgattgccggcatggagaacatgcgtgtgaagaacctgattttgtccaac
cagcacgacgtggtttggccctcatggctgctggagtgcctgaaccagaaggaagtggtg
ccatggcaaccacaccacatgatccacatgtcgccctccaccagggaacactttgccaag
gagtacgacagctacggcgacagctactttgtggacacagacgagcagcagttgcgagag
gtcttcggcaggatcggcagtgggggcgtggcggcggctgcggctgcggccgtggacctc
gcgcaggtcgagcagcgttacagctgggacgaccttcccaccagtatgttcagacccttc
acagtttacatggacagctatgctgacataggagaccctgaaactgccatacctgccacc
tgtttggacatccgggcgctggagtttcgataccacgggggcacagtggtgcaggagttg
gaggaaggagtctctcacgtcataatcacagaggaaacacgacttctggatttcaagact
ctgaggcggcgctttaggaagaagtttaagatcgtaaaagactcatgggtgactgattca
attgaagcagggtatctgatgaatgacgataactacttggtttaa
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integrated database retrieval system
