Solanum dulcamara (climbing nightshade): 129873912
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Entry
129873912 CDS
T09577
Name
(RefSeq) DNA ligase 6-like isoform X1
Organism
sdul
Solanum dulcamara (climbing nightshade)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
129873912
NCBI-ProteinID:
XP_055805079
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Position
11:complement(55389300..55408673)
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AA seq
1421 aa
AA seq
DB search
MSSDAGTLTLDSTTLYINALNSLSGKSSSNSIPLSLPLPPIPSSIPRPKLIPRTRLIIDG
FKYAGDFSVSYFLSHFHSDHYTGLSSNWSKGIIFCSSTTANLLIEVLYVPAQYVVSLPLS
EAVLIDGSEVFLIDANHCPGAVQFLFKVPVSNGKFERYIHTGDFRYCDDMKLEPVLNAFV
GADAVFLDTTYCHPKFIFPSQQESIDYIVGVIEKSGVENEGSLKNILFVIATYVIGKEKI
LMEVSRRCQRKIHVDGRKMSVLGVLGHGEDGVFTTVESETDVHVVGWNVLGETWPYFRPN
FEKMDKIMNEKGYSKVVGFVPTGWTYEVKRSKFSVRKKDSFEIHLVPYSEHSNYDELRQY
VKFLKPKHVIPTVGTDVEKLDSKYANAMRKHFAGLVDEMAIKQEFLMGFHRCVQGKEDVD
AKESGLSLVSITEQENTNESVHTLVSIIKQENEDTSSDSKSCNAADMDAVIRSSFPQGEP
VSPGLEKISEGDIEEILKELQVCLPSWVTKGQMLDLLSISGKNVVDAVTNFYEHETEYRE
QATSSNSVTSSFEANSANGSALPSKPCLGKSPQQGETTASSKTVKLSIMDSSSKKKNSPG
KRKRSTGNKSSKKAKGHASMESGGPKQCTITKFFSKTVPLSLQNGNSDADSKNFHDDNSM
PPNASIEAYKEEADQFIQIVNGDGLLRSYATTVLAKTKGNISMALDIYFSDCKDVGETNV
DGISKTNKLVQSQCAKEVYPSSEDDKLPKILGDDDADLSLCGVPFADNAVNYVSLPPEKY
SPVEHACWSKGQAAPYIHLARTFELVKEEKGKIKATSMLCNMFRSLLALSPEDVLPAVYL
CTNKIASDHENMELNIGGSIVVAALEEACGTKKSKLRELYNSLGDLGDVAQLCRQTQSLL
APPVALTVRGVYSVLRRISLQAGSGSAIRKKGLIVNLMCSCREKEMKFLVRTLVRNLRIG
AMMRTVLPALAQAVVFNSTPYEGLVGNLKDCLQRLSAEVVEAYNILPSLDVLVPSLMEKG
IEFSSNTLSMAPGIPIKPMLAKITNGAPQVMKLFQNKAFTCEYKYDGQRAQVHKLADGSV
RVFSRNGDETTSRFPDLVNIITETCGSRGATFILDAEVVAIDRQNGSKLMAFQELSSRER
GSKDSIIALDKIKVEICIFVFDIMFANGEQLLNLPLRQRRKYLKDLFGDGKVGYFEYATE
MTVEYNDACADDEATLVRMKSFLNDALLSSCEGIMVKSLDVDAGYTPSKRSDAWLKVKRD
YVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDSFYVEM
RDFFDGDKIFQKKPPYYRTAEVPDMWFSPEVVWVIRGADFTVSPVHHAAIGLVHPSRGIS
VRFPRFIRCLSDRKPEECSTSADIADMFHSQTRKMDVNVEK
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgacgccggaaccctaaccctagactcaaccactctgtacataaacgctctc
aactccctctccggcaaatcctcatcaaattcaatcccattatccctccctctcccccca
atcccttcttcaatcccccgaccaaaactcatcccaagaactcgcttaatcatagacggt
ttcaaatatgccggcgatttctccgtttcgtacttcctctcccatttccactccgatcac
tatactggcctgtcctctaattggtctaaaggtatcattttctgttcctccaccactgct
aaccttctcatcgaagttctctatgttcccgcgcagtatgtagtgtctttaccgctctcc
gaagcggttttaatagacggttctgaggtttttctcatcgatgctaatcattgtcctggc
gctgtgcaattcttatttaaagttccagttagtaatggcaaatttgagcggtacattcac
acaggtgattttcgttattgtgatgacatgaaattagagcctgtgttgaatgcatttgtc
ggtgctgatgctgtatttttggatacaacttattgtcatccgaaatttatattccctagt
caacaggagtcaattgattatatagttggagttatagagaaaagtggagttgagaacgag
ggttcattgaaaaatatcttgtttgttattgctacttatgttattgggaaagagaagatt
ttaatggaggtttcacggaggtgtcagagaaagatccacgttgatggcagaaaaatgtca
gttttaggagtattaggtcatggggaggatggggtgtttactactgttgaatctgaaact
gatgttcatgttgttgggtggaatgtattgggtgagacttggccatatttcagacctaat
tttgagaaaatggataagatcatgaatgagaaaggatattccaaggtggttggttttgtc
cccacaggttggacttatgaagtgaagcggagtaagttttctgtgagaaagaaagattcc
tttgagatacatcttgttccgtatagtgaacattcaaattatgatgagcttagacaatat
gtgaagtttttgaaaccaaagcatgtcattccaacagtaggtacagatgttgagaagctg
gatagcaaatatgccaatgccatgcggaagcattttgctggcttggttgatgagatggcc
atcaagcaagaatttctaatgggttttcatcgttgtgtccaagggaaggaggacgtagat
gcaaaagaatctggtctttccttagttagtatcaccgagcaagaaaacacaaacgaatct
gttcatactttagtcagtatcatcaagcaagaaaatgaggatacttcatcagattctaaa
agctgcaatgctgctgatatggatgctgttatccgttcctcatttcctcaaggagaacct
gtgtcgccaggtttagaaaaaataagtgaaggtgatatagaggaaatactaaaagaactt
caagtctgtttgccctcttgggtcactaaaggtcagatgttggatttacttagtatttcg
ggtaaaaatgttgttgatgcagtcacaaacttttacgaacatgaaacagaatatcgtgaa
caggccacttccagtaattctgttacctcttcttttgaggcaaactcagcaaatgggtct
gcattgccttccaaaccatgtcttggtaaaagcccccagcagggtgagacaactgcatca
agtaaaaccgttaaactatccatcatggacagttccagtaaaaaaaaaaattctcctggt
aaaaggaagagaagtactggaaacaagtcttctaagaaagcaaaaggacatgcaagtatg
gaatctggtggaccgaagcaatgtactataacaaagttcttcagtaaaacggtgcctctt
tctttgcagaatggaaacagtgacgctgatagtaaaaatttccatgatgataacagcatg
ccaccaaatgcctctattgaggcttataaagaagaagctgatcagtttattcagattgtg
aatggagatgggttattaagaagttatgctaccacagtactagcgaagacgaaaggaaac
ataagtatggcactggatatttatttttcagattgcaaagacgtaggagagactaacgta
gatggtatttctaaaacaaacaaattggtgcaatctcagtgtgctaaagaggtttaccct
tcttctgaagatgataaattgcccaaaatattaggagatgatgatgccgatttgtcgttg
tgtggagttccctttgctgataatgctgtaaattatgtatcacttccccctgagaaatac
tctcctgtggaacatgcttgctggagtaaggggcaggctgctccatacatacatcttgca
cgaacttttgaattggtaaaggaagaaaaagggaagataaaagcaacatcaatgttgtgc
aatatgtttcggagcttgctagcgttgtctccagaggatgtgcttcctgcagtgtacttg
tgcacaaacaagatagcttctgaccatgaaaatatggaattgaacattgggggtagtatt
gttgtagcagcactagaggaggcatgtgggacaaagaagtcgaaattacgagaactatac
aacagcctcggtgatcttggtgatgttgctcaactttgccgacaaacacaatcattactt
gctcctccagtggcacttacagttaggggtgtgtactctgttttaagaaggataagcttg
caagcaggtagtgggagcgccatccgaaagaaaggccttattgtcaatctcatgtgttca
tgtagagagaaggagatgaagtttctcgtgagaactttggttcggaatttgcgcattgga
gccatgatgagaactgttcttcctgcattagctcaagctgttgtgttcaattctactcct
tatgaaggactggtcggaaacctgaaagattgtctgcagcgactttcagcagaagtagtt
gaagcatataacatccttcctagcttggatgtacttgttccttccttgatggagaagggg
attgagttttcttcaaatactttgtcaatggctccaggcatacccatcaaaccaatgctt
gcaaagattactaatggcgcccctcaagtgatgaagctctttcagaacaaagcctttaca
tgtgaatacaaatatgatggtcagcgagctcaggttcataaattagctgatggttcagtc
cgtgtattttcaaggaatggggatgaaacaacatctagattcccggatttggtaaacata
attacagaaacatgtggttccagaggagcaacatttatcttggatgcagaggttgttgca
attgataggcaaaatggttcaaagctcatggcgttccaagaactatcttcacgtgagaga
gggtccaaagattccatcattgcgttagataaaattaaggttgagatatgcatttttgtt
ttcgatatcatgtttgcaaatggagaacaattgttgaatctgccgctccgtcaaaggcga
aaatatttgaaggatttatttggtgacggcaaagtaggttatttcgagtacgcaactgaa
atgactgtagagtacaatgatgcttgtgcagatgatgaagccacactggttaggatgaaa
agctttcttaatgatgcactactctcttcgtgtgaagggatcatggtgaaatcccttgat
gtagatgctgggtacacaccatcaaagcgctctgatgcatggttaaaggtgaagagagac
tatgttgaaggattaaatgattccctggacttggttccaattggtgcttggcatgggaat
ggaagaaaagcaggatggtatagtcctttccttatggcctgctacaaccctgatacagag
gaattccagagtgtctgccgggtcatgtctgggttttctgattccttctacgtagagatg
agagacttcttcgatggggacaaaatcttccagaaaaagccaccctactatcgaactgca
gaagtgccggatatgtggttttctccagaagttgtgtgggtgatacggggtgccgacttc
acagtgtcaccagtgcatcacgcagccattggtttagtccatccatctcgtggtatttct
gtcagattccctaggttcatccggtgtttgtcagatagaaaacctgaggaatgtagcaca
tctgcagatatagctgacatgttccactctcagactagaaaaatggatgtgaatgttgaa
aaatag
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