Solanum dulcamara (climbing nightshade): 129891080
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Entry
129891080 CDS
T09577
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129891080
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdul04147
]
129891080
Membrane trafficking [BR:
sdul04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
129891080
Exosome [BR:
sdul04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129891080
Exosomal proteins of bladder cancer cells
129891080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
Coatomer_WDAD
WD40
ANAPC4_WD40
NBCH_WD40
Fis1_TPR_C
zf-CHCC
Motif
Other DBs
NCBI-GeneID:
129891080
NCBI-ProteinID:
XP_055822305
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All DBs
Position
6:41247944..41255904
Genome browser
AA seq
1219 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTQRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVTASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHPRQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILASHP
EMNLLAAGHDSGMIVFKLERERPAFSVSSDSLFYVKDRFLRVYEYSTQKDTQLIPIRRPG
SNNVNQGPRTLSYSPTENSVLICSDTDGGSYELYIVPKDSYGRGDTVQDAKRGTGGSAVF
VARNRFAVLEKSTNQVLVKNLKNEIVKKSLLPMATDAIFYAGTGNLLCRAEDRVVIFDLQ
QRIILGDLQTSFIRYVVWSPDMESVALLSKHSIVIADKKLVHRCTLHETIRVKSGAWDDN
GVFIYTTLTHIKYCLSNGDCGIVKTLDVPVYITKIYGNTIFCLDRDGKNHPIIIDSTEYV
FKLCLLRKRYDQVMSMIRNSELCGQAMISYLQQKGFPEVALHFVKDERTRFNLALESGNI
EIALESAKKIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFLYLLTGNVEKLSK
MMKIAEVKNEVMGQFHDALYLGDVSERVKILENAGHLPLAYVTATVHGLNDTAERLAEKL
GDNVPSLPKGKKASMLLPPTPILGGGDWPLLMVTKGIFEGGLDIAGRGGQEEYEEAVDAD
WGESLDIGEVENLQNGDISIVLGDEEGQEGNDDGEGGWDLEDLDLPPDTDTPKTTSNARS
SVFVTPTPGMPVSQIWIQKSSLAAEHAAAGNFDTVMRLLSRQLGIRNFSPLKSLFIDLHV
GSHTHLLAFSSAPVISVAIERGWSESASPNVRGPPALIFSFAQLEERLKASYKATTGGRF
SDALRLFLSILHTIPLIVVESRREVDEVKELIVIVKEYVLGLQMELKRKELKDNPIRQQE
LAAYFTHCNLQLPHLRLALQNAMSICYKAGNLSSAANFARRLLETNPTNESQARTARQVL
HAAEKNMRDVTQLNYDFRNPFTVCGATYLPIYRGQKDVTCPYCGAHFVLSQQGELCTVCD
LAIVGADASGLLCSASQIR
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaagttcgagaccaagagtaacagagtgaaaggtttgagttttcacacccaa
aggccatggatcttagccagtcttcatagtggggtcatacagctatgggattaccgtatg
ggaactctcattgatcgatttgatgagcacgatggccccgttcgcggtgtccattttcac
aaatctcagcctctatttgtttctggaggagatgattacaaaattaaggtttggaactat
aagctgcatcgctgcttgtttaccctgctcggacatcttgattatatccgaacagttcaa
tttcaccatgaatatccatggattgttaccgcaagtgatgaccagactattcggatatgg
aactggcagtctcgtacttgtatttctgtcttgactggccacaatcattatgtaatgtgt
gcctcatttcatcccaaagaggacttggttgtctctgcttccttggatcagactgttcgt
gtctgggatattggtgccctaagaaagaaaactgtttctcctgctgatgatatcttgcgg
ttgagtcagatgaatactgatttctttgggggagtggatgctgtggtgaagtatgtcttg
gagggtcatgatagaggggttaactgggcatcttttcatcctacactcccccttatagtt
tctggtgcagatgatcgccaagtgaaaatttggcggatgaatgatacaaaagcttgggag
gtggacactttgagaggacacatgaacaatgtttcatgtgttttattccatccaaggcaa
gatattattgtttcaaattcagaggataagagcattcgagtgtgggatgcaacaaaaagg
actggtcttcagacttttcgcagggagcatgataggttttggatccttgcatctcatcct
gagatgaatcttctagcagctggtcatgacagtgggatgatagtattcaagttggagaga
gaacgacccgctttttctgtgagcagtgattctctgttttatgtaaaggatcgctttctc
cgtgtgtatgagtattcaactcagaaggacacacagttgataccaattagaagacccggt
tcaaacaatgtgaatcaaggtccacgaactctttcatacagtcctacagaaaattctgtc
ttgatatgttcagacacggatggtggttcctatgaactttacattgtacccaaagatagt
tatggtaggggtgatactgttcaagatgcaaaaagaggaaccggagggtcagctgtgttt
gttgcccgaaacaggtttgcagtgcttgagaagagcactaatcaagtcctggtaaaaaat
ctgaagaatgaaattgtcaagaaaagccttcttcctatggctactgatgcaatattttat
gctggcactggaaacttactatgtagggcagaggatagagttgtcatttttgatctccag
cagagaattattcttggggatcttcagacttctttcatcaggtatgttgtttggtcacct
gatatggaaagtgtcgctttgcttagcaagcactccatagttatagctgataagaagctt
gtgcaccgttgcacccttcatgagacaattcgtgtcaaaagcggtgcctgggatgacaat
ggggtattcatatataccacacttacccacattaagtactgtctgtccaacggggattgt
ggaatcgtcaaaaccctagatgttcctgtctatattacaaaaatatatgggaacactatc
ttttgcttggatagagatggcaaaaaccatcctattattattgattcaactgaatatgtt
ttcaagttgtgtctgcttagaaagagatatgaccaagttatgagtatgataagaaactca
gagctctgtggtcaggccatgatttcatatttgcagcagaagggttttccagaagttgct
cttcattttgtgaaggatgagcgcactcgtttcaacttagcacttgaaagtgggaatatt
gagatagctcttgaatctgctaagaagattgatgaaaaagatcattggtataggcttggc
gtggaagcccttcggcagggcaatgctggtattgttgaatatgcctaccaaaagacgaag
aattttgagaggctctctttcctatatctattaacaggaaatgtggagaagttatctaaa
atgatgaaaattgctgaggtcaaaaatgaagtaatgggtcagttccatgatgccttgtac
ctcggtgatgtctctgagcgtgttaaaattttggaaaatgctggtcatctgccccttgca
tacgtcacagctacagtccatgggctcaatgatactgctgagcgtcttgcagagaaactg
ggggataatgttccatcattgccaaaggggaagaaagcttcaatgttgctgcccccaact
cccattttgggtggtggagactggcctttgctgatggtaacgaaagggatatttgaaggt
ggtctggatattgcaggcaggggaggacaagaggaatatgaagaggctgtggatgcagac
tggggtgagtcattggacatcggtgaggtggaaaatctgcagaatggggacatcagtatt
gtgcttggtgatgaggaaggacaagaaggaaatgatgatggggagggaggatgggatctt
gaggatctggatctgccacctgatacagacacaccgaagactacttccaatgctcgctct
tctgtgtttgtcaccccaacacctggcatgcctgtcagccagatttggatccaaaaatca
tctctagctgctgaacatgcagctgctggaaattttgacactgttatgcggttgttgagc
cgacaactggggattaggaacttctctcctttaaaatcattgtttattgatcttcatgtg
ggaagccacactcatctgcttgccttctcctcggcgccggtcatctccgtggcaattgag
agaggttggagtgagtcagctagtcctaatgttcgaggtccacctgctcttatattcagt
tttgctcagttggaggaaagacttaaagcttcttataaggcgactactggtgggagattt
tctgatgcccttagactattcctgagcatccttcacaccattcctctgattgtggttgag
tcgagacgagaagtggatgaagtcaaggaattgattgtcatagtgaaagagtatgttttg
ggtttgcagatggagcttaagaggaaggaattgaaagataatcctattcgccagcaggaa
ctggcagcctatttcactcactgtaatctgcagcttcctcacttgagactcgcattacaa
aatgctatgtctatatgctacaaggccggaaatcttagctcagcagccaactttgctagg
agactcttggagaccaatcccaccaatgaaagccaagccagaacagcccgccaggttctg
catgcagctgagaaaaatatgcgagatgttacacagttgaattatgatttcagaaatcct
tttacagtctgtggggcaacatatttgccgatataccgtggtcagaaggacgtcacttgt
ccttactgtggtgctcattttgtactgtctcagcaaggggagctttgtactgtttgtgat
cttgcaattgttggagctgatgcctctggtttgctttgctcggcatcacagatcaggtga
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integrated database retrieval system
