KEGG   Solanum dulcamara (climbing nightshade): 129903126
Entry
129903126         CDS       T09577                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03082  ATP-dependent chromatin remodeling
sdul03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129903126
   03083 Polycomb repressive complex
    129903126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sdul03036]
    129903126
Enzymes [BR:sdul01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     129903126
Chromosome and associated proteins [BR:sdul03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     129903126
   HDAC complexes
    Sin3A-HDAC complex
     129903126
    BRAF-HDAC complex
     129903126
    REST complex
     129903126
    SHIP complex
     129903126
    MiDAC complex
     129903126
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     129903126
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    129903126
  Chromatin remodeling factors
   NuRD complex
    129903126
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 129903126
NCBI-ProteinID: XP_055834597
LinkDB
Position
9:75852100..75859578
AA seq 430 aa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHSKMEVYRPHKAYPVEL
AQFHSADYVEFLNRITPDTQNLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGSFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWALETGVLLDTELPNEIPDNDYIKYFAPDYTLKLPGGHIENLNSKSYIGTIK
MQVMENLRCLQHAPGVQMQEVPPDFYIPDFDDDEQNPDERVDQHTQDKHIQRDDEYYDGD
HDNDNHTDDA
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcggtccaaggacaaaatctcctatttctacgacggtgatgttggaagcgtatacttt
ggtccgaatcatccaatgaaaccgcacaggttgtgtatgactcatcatctggttctagct
tatggtcttcacagcaagatggaagtttataggcctcacaaagcatatccagtggagtta
gcgcagtttcattctgctgattatgtagaattcttgaaccgaataaccccagatacccag
aatttgttccctagtgaaatggcaagatataatcttggagaagattgccctgtatttgac
aacttattcgagttttgtcaaatatatgctggtggaacaatagatgctgcacgtagattg
aataatcagctttgtgatattgcaataaattgggctggtggactgcatcatgccaagaag
tgtgcggcttcaggattttgctatatcaatgacctagttctggggatattggagcttcta
aagtatcatccgcgggtgctctatattgatattgatgtgcatcacggtgatggtgtagaa
gaggccttttatttcactgacagggttatgaccgttagtttccacaagtatggggataag
ttctttcctggaactggtgatatgaaggatacaggggaaagagatggaagattctattcc
ataaatgtgcctctaaaggatggaatagatgatggcagtttcactagactcttcaaaaca
attatttcaaaggttgttgaaacatatttacctggcgcaatagttctgcaatgtggggca
gattcgcttgctggagaccgtctgggctgcttcaacctctccattgatggacatgctgaa
tgtgtaaggtttgtgaagaaatttaatttgccgctgctggtaactggaggtgggggatac
acaaaagagaatgttgcccgttgttgggctctggaaactggagttcttttagacacagag
cttcctaatgaaataccagacaatgattacatcaagtattttgcccctgattatacactg
aagcttcctggtggacacatagagaatctgaatagcaaatcatacattggcaccataaaa
atgcaagtgatggaaaatcttcgttgcctccagcatgctcccggtgtacagatgcaagag
gtaccgcctgacttttatattcctgattttgatgacgatgaacaaaatccagatgaacgt
gtggatcagcatacccaagataagcatatccaacgtgacgatgagtattatgatggtgac
catgacaatgataaccacactgatgatgcctaa

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