Solanum dulcamara (climbing nightshade): 129903126
Help
Entry
129903126 CDS
T09577
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03082
ATP-dependent chromatin remodeling
sdul03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129903126
03083 Polycomb repressive complex
129903126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sdul03036
]
129903126
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
129903126
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
129903126
HDAC complexes
Sin3A-HDAC complex
129903126
BRAF-HDAC complex
129903126
REST complex
129903126
SHIP complex
129903126
MiDAC complex
129903126
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
129903126
Heterochromatin formation proteins
Other heterochromatin formation proteins
129903126
Chromatin remodeling factors
NuRD complex
129903126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
129903126
NCBI-ProteinID:
XP_055834597
LinkDB
All DBs
Position
9:75852100..75859578
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHSKMEVYRPHKAYPVEL
AQFHSADYVEFLNRITPDTQNLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGSFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWALETGVLLDTELPNEIPDNDYIKYFAPDYTLKLPGGHIENLNSKSYIGTIK
MQVMENLRCLQHAPGVQMQEVPPDFYIPDFDDDEQNPDERVDQHTQDKHIQRDDEYYDGD
HDNDNHTDDA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcggtccaaggacaaaatctcctatttctacgacggtgatgttggaagcgtatacttt
ggtccgaatcatccaatgaaaccgcacaggttgtgtatgactcatcatctggttctagct
tatggtcttcacagcaagatggaagtttataggcctcacaaagcatatccagtggagtta
gcgcagtttcattctgctgattatgtagaattcttgaaccgaataaccccagatacccag
aatttgttccctagtgaaatggcaagatataatcttggagaagattgccctgtatttgac
aacttattcgagttttgtcaaatatatgctggtggaacaatagatgctgcacgtagattg
aataatcagctttgtgatattgcaataaattgggctggtggactgcatcatgccaagaag
tgtgcggcttcaggattttgctatatcaatgacctagttctggggatattggagcttcta
aagtatcatccgcgggtgctctatattgatattgatgtgcatcacggtgatggtgtagaa
gaggccttttatttcactgacagggttatgaccgttagtttccacaagtatggggataag
ttctttcctggaactggtgatatgaaggatacaggggaaagagatggaagattctattcc
ataaatgtgcctctaaaggatggaatagatgatggcagtttcactagactcttcaaaaca
attatttcaaaggttgttgaaacatatttacctggcgcaatagttctgcaatgtggggca
gattcgcttgctggagaccgtctgggctgcttcaacctctccattgatggacatgctgaa
tgtgtaaggtttgtgaagaaatttaatttgccgctgctggtaactggaggtgggggatac
acaaaagagaatgttgcccgttgttgggctctggaaactggagttcttttagacacagag
cttcctaatgaaataccagacaatgattacatcaagtattttgcccctgattatacactg
aagcttcctggtggacacatagagaatctgaatagcaaatcatacattggcaccataaaa
atgcaagtgatggaaaatcttcgttgcctccagcatgctcccggtgtacagatgcaagag
gtaccgcctgacttttatattcctgattttgatgacgatgaacaaaatccagatgaacgt
gtggatcagcatacccaagataagcatatccaacgtgacgatgagtattatgatggtgac
catgacaatgataaccacactgatgatgcctaa
DBGET
integrated database retrieval system