Streptomyces durmitorensis: M4V62_08980
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Entry
M4V62_08980 CDS
T08503
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sdur
Streptomyces durmitorensis
Pathway
sdur03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M4V62_08980 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdur03400
]
M4V62_08980 (ligD)
Enzymes [BR:
sdur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M4V62_08980 (ligD)
DNA repair and recombination proteins [BR:
sdur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M4V62_08980 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UQT55220
LinkDB
All DBs
Position
complement(1962624..1963589)
Genome browser
AA seq
321 aa
AA seq
DB search
MTSARTLRAGGHTIELHRPDKVLFPADGTADRTTDGSAGSAKAGYTKGDLADYYRAVAPF
MLPHLRGRPLMLERHPDGVDGPRFMQKDTPGHYPDWITRAEVAKEGGTVTHTVCDDTATL
LYLADQACLTLHRWTSRVGGTGGVTHPDRLVFDLDPAKDDFGPVRDAARLLGELLDHVGL
PSALMTTGSRGLHVIVPLNGRHDFDDVRAFAKDVAETLAQAHPEQLTTAARKKDRGDRLY
LDVQRNAYAQTVVAPFSVRARPGAPVAVPVAWEAVDDPALGARSWTIEGAVEQARTDPWA
GLLRSGRALGPARRKLRALRG
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcgcacgaaccctgcgggcgggaggccacaccatcgagctgcaccggcccgac
aaggtcctcttcccggccgacggcacggcggaccgcacgaccgacggatcggcgggctcc
gcgaaagcgggctacacgaaaggggacctcgccgactactaccgggccgtcgccccgttc
atgctgccccacctgcgcggccgccccctgatgctggagcggcacccggacggcgtcgac
gggccccgcttcatgcagaaggacacccccggccactacccggactggatcacccgcgcc
gaggtcgccaaggagggcggcaccgtcacgcacaccgtctgcgacgacaccgccacgctc
ctctacctcgccgaccaggcctgcctcacgctgcaccgctggacgtcccgcgtcggcggc
accggcggcgtcacccatcccgaccggctcgtcttcgacctcgacccggccaaggacgac
ttcggccccgtgcgcgacgccgcgcgtctcctgggcgaactgctcgaccacgtcgggctg
ccctccgccctgatgaccacgggctcgcgcggactgcacgtcatcgtgcccctcaacggc
cgccacgacttcgacgacgtacgcgccttcgccaaggacgtcgccgagacgctcgcccag
gcccaccccgagcagctcaccacggccgcccgcaagaaggaccgcggcgaccgtctctac
ctggacgtgcagcgcaacgcgtacgcgcagaccgtcgtcgcccccttctcggtccgcgca
cggcccggcgcgccggtggccgtgcccgtcgcctgggaggccgtcgacgaccccgcgctc
ggcgcccgcagctggaccatcgaaggcgccgtcgagcaggcccgcaccgacccctgggcg
ggactcctgcgctcgggacgcgccctgggcccggcccgccgcaagctgcgcgcgctgcgc
ggctga
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integrated database retrieval system
