Salmonella enterica subsp. enterica serovar Dublin: SeD_A0205
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Entry
SeD_A0205 CDS
T00757
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sed
Salmonella enterica subsp. enterica serovar Dublin
Brite
KEGG Orthology (KO) [BR:
sed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sed03019
]
SeD_A0205 (hrpB)
Enzymes [BR:
sed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SeD_A0205 (hrpB)
Messenger RNA biogenesis [BR:
sed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SeD_A0205 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_22
HA2_N
Motif
Other DBs
NCBI-ProteinID:
ACH75576
UniProt:
A0A6C6ZXY0
LinkDB
All DBs
Position
215961..218435
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AA seq
824 aa
AA seq
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MLQCGAKKVNPVEPFVTSLPVAAVLPELLTALKTAPQVLLSAPTGAGKSTWLPLQLLQQG
PVAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMRAQSCVGPRTRLEVVTEGVLT
RMIQRDPELRGVGLVILDEFHERSLQADLALALLLDIQQGLRDDLRLLIMSATLDNDRLC
QRLPDAPTIVSEGRAFPVERRYQPLATHLRFDEAVAMATAELLRNENGSLLLFLPGVGEI
QRVHEHLASRVGSDVLLCPLYGALSLEAQRKAIVPAPVGMRKVVLATNIAETSLTIEGIR
LVVDSAQERVARFDARTGLTRLVTQRISQASMTQRAGRAGRLAPGICLHLLAKEQAERAA
AQSDPEILHSDLSGLLMEVLQWGCHDPASLFWLDRPPEVNLQAARRLLLMLGALEGERLS
ARGRKMAAMGNDPRLAAMLVNADEGDSAATAAMLAAILEDPPRGGGTDLSVLFSRRQPGW
QQRSQQLLKRLQVRNGEPDSALIMPLLARAFSDRIARRRGQEGRYQLANGMGAMLDADDA
LGRHEWLIAPLLLQGSASPDARILLAQPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAW
RRMRIGQLTVSVQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLHCAAKWLP
EYDWPAVDEASLLATLENWLLPHMTGVQSLRGLKSLNVNQALRGLLDYAMLQRLDSELPG
HYTVPTGSRITIRYHEDNPPALAVRMQEMFGEAKTPTIAQGRVPLVLELLSPAQRPLQIT
RDLSAFWQGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgctacaatgcggcgcaaagaaagttaaccccgtggagccgtttgtgacgtcattgccc
gttgccgccgtattgcctgaattgttgacagccctaaaaaccgcgccgcaggttttgttg
tccgcgcctaccggggcggggaaatccacctggctgccgttgcaactcctgcaacagggg
ccagttgctggaaaaattctcctgcttgaaccgcgtcgtctggcggcgcgtaatgtcgcg
cagcgtctggcggaagcgttgaatgaaaagcctggcgaaacggtaggttaccggatgcgc
gcgcaaagctgcgtggggccgcgtacccggctggaagtggtgacagaaggcgtattgacc
agaatgattcagcgcgatcccgaattacgcggcgtggggctggtgatactggatgaattt
catgagcgcagtttacaggcggatttagcgttggcgctgttgctggatatccagcaaggg
ctccgtgacgatctcaggctgttaatcatgtctgcgacgctggataacgacaggctttgt
cagcgactgcctgatgcgccgacgatcgtctcggaggggcgcgcgttcccggtggagcga
cgttatcagccgctcgcgacgcatttgcgttttgatgaagccgtcgcgatggcgacagcg
gaactgttgcgcaatgaaaacggttcgctgctgctatttttacccggcgtaggtgaaata
cagcgcgttcatgaacatctggcgtcgcgggtagggagcgatgtcctgctttgtccgctg
tatggcgcattgtctttggaggcgcaacgcaaagcgattgttcccgcccccgtcgggatg
cgtaaagtggtgttggcgactaacattgccgaaaccagtttgacgattgaagggattcgt
ctggtcgtcgatagcgctcaggagcgcgtggcgcgattcgacgcgcgaacgggactgacg
cggctggttacgcagcgtatcagtcaggcgtcaatgacgcagcgcgcggggcgcgccgga
cgactggcgccggggatctgtttacatctgctggccaaagaacaggcggagcgggcggcg
gcgcaaagcgatccggaaatcttacacagcgacctttccggtttattgatggaggtgttg
cagtggggatgtcacgatccggcatcgcttttctggctggacaggccgccggaggtgaat
cttcaggccgcccgccgtttattattgatgttaggcgcgctggagggcgagcggttaagc
gcgcggggccggaaaatggcggcaatgggtaacgatccgcgcctggcggcgatgttagtc
aacgccgacgagggcgatagcgccgccaccgccgccatgctcgcggccatccttgaggac
ccgccgcgcggcggcggtacggatttaagcgtgctattttcgcggcgacagccgggctgg
cagcagcgtagccagcagcttttaaaacggctgcaggtgcgtaatggcgagccggatagc
gcgcttattatgccgctgttggccagagcgtttagcgaccgcatcgcgcggcgtcgtggt
caggaagggcgctatcagttagccaatggtatgggcgcgatgttagatgcggatgacgcg
ttgggacgtcatgaatggctgatcgcgccgctgttactgcaaggtagcgcctcgccggac
gcccgaatattgttggcgcagccgctggatattgcctcgcttattcaggcgtgtcctgat
ttactgcgccagtccgacacggttgaatgggacgaggcgcagggaacgttgaaagcatgg
cgcagaatgcgtattggacagttgacggttagcgttcagccactggcgaagccgtctgaa
gaggagcttcatcaggcgatgctgaacggcatccgcgataaaggtctgtccgtccttaac
tggacgccggaagcggagcagttccgtctgcgtctgcactgtgcggcgaaatggctgccg
gaatatgactggcctgccgtggatgaggcgtcgctgctggcgactctggaaaactggttg
ctgccgcacatgacaggcgtacagtcgttacgagggctaaaatccctgaacgttaatcag
gcgttacggggactgcttgactatgccatgctgcaacgtctggatagtgaactgcctggg
cattacactgtgccgacgggaagccgaataacgattcgttatcatgaagataacccgccc
gcgctggcggtcagaatgcaggaaatgtttggcgaagcgaagaccccaaccatcgctcag
ggccgcgtgccgctggtgctggaactgctttcgccagcgcagcgaccgctacagattacg
cgcgatttaagcgctttctggcagggggcgtatcgcgaagtgcaaaaagagatgaaaggc
cgttatcccaaacatgtctggccggacgatccggcgaatacggccccaacgcggcgcacg
aagaagtattcgtga
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