Salmonella enterica subsp. enterica serovar Typhimurium T000240: STMDT12_C40360
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Entry
STMDT12_C40360 CDS
T01742
Name
(GenBank) tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
KO
K03495
tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Organism
sem
Salmonella enterica subsp. enterica serovar Typhimurium T000240
Brite
KEGG Orthology (KO) [BR:
sem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sem03016
]
STMDT12_C40360
03036 Chromosome and associated proteins [BR:
sem03036
]
STMDT12_C40360
Transfer RNA biogenesis [BR:
sem03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
STMDT12_C40360
Prokaryotic type
STMDT12_C40360
Chromosome and associated proteins [BR:
sem03036
]
Prokaryotic type
Chromosome partitioning proteins
Other chromosome partitioning proteins
STMDT12_C40360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIDA
GIDA_C_1st
GIDA_C
FAD_oxidored
FAD_binding_2
AlaDh_PNT_C
Pyr_redox_2
HI0933_like
DAO
Thi4
Pyr_redox
MarR_2
NAD_binding_9
Pyr_redox_3
Motif
Other DBs
NCBI-ProteinID:
BAJ38979
NITE:
STMDT12_C40360
LinkDB
All DBs
Position
complement(4187010..4188899)
Genome browser
AA seq
629 aa
AA seq
DB search
MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV
KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI
FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS
IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV
PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE
GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK
FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL
GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL
KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE
QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ
ASRISGVTPAAISILLVWLKKQGMLRRSA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgttttatcaggatccttttgacgtcattattattggcgggggtcatgcaggcactgag
gccgcgatggccgcagcgcgtatgggtcaacagactctgcttttgacacacaatattgac
acgttgggacagatgagctgcaacccggcgatcggcggtattggaaagggacatctggta
aaagaggtggatgcgctcggcggtctgatggcgaaagcgatcgatcaggcaggtattcag
tttaggatactaaacgccagcaaaggtccggccgttcgcgctacccgggctcaggcggat
cgagtcttataccgccaggcggtgcgtaccgcgctggagaatcagccgaatctgatgatc
ttccagcaagctgttgaagatctgattgtcgaaaacgatcgcgttgtcggcgccgtgacc
caaatggggctcaaattccgcgcgaaagcggtggtactgaccgtcggaaccttcctggat
ggcaaaattcatattggtctggataactacagcggcggtcgtgctggcgatccgccatcc
atcccgctgtctcgccgtctgcgtgagcttccgctacgcgtcagccgcctgaaaaccggc
acaccgccgcgtattgatgcgcgtactatcgatttcagcgtgttggctcaacagcatggc
gataacccgatgccggttttctcgtttatggggaatgcttctcagcatccgcaacaggtg
ccgtgttacatcacgcataccaatgagaaaacccatgacgtgattcgtaataacctcgat
cgtagcccaatgtacgctggcgtgatcgaagggatcggcccacgctactgtccttcgatc
gaagacaaggtgatgcgttttgccgatcgtaaccagcatcagatcttccttgagccggaa
ggactgacctctaacgagatttaccctaacggtatctccaccagcctgccgtttgacgtg
cagatgcagattgtccgttccatgcagggtatggagaacgcgaagatcgttcgccctggt
tacgcgattgagtacgatttcttcgacccgcgcgatctgaaaccgactctggaaagtaaa
tttattcacggcctgttctttgctggtcaaatcaacggtactaccggctatgaagaggct
gcggcgcagggcttgctcgctggtctgaatgccgcgcgtctttccgccgacaaagagggc
tgggcgcctgcgcgttctcaggcttatctcggcgtgctggtggacgatctctgtacgctg
ggcaccaaagagccgtatcgcatgtttacctcccgtgccgaatatcgtctgatgctacgt
gaggacaatgccgatctgcgtctgactgaaatgggccgcgagctgggtctggtggatgat
gaacgctgggcgcgcttcaacgagaagctggaaaatatcgaacgcgaacgtcagcggctg
aaatcgacatgggtaacgccgtctgcggaatccgccgatgaagtgaatgcgcatttgacc
acgcctctctcccgtgaggccagcggcgaagatctgttgcgtcgtccggaaatgacctac
gcgcagctcacttcgcttgccgcattcgcgcctgcgcttgaagatgagcaagccgctgag
caggtggaaatccaggtcaaatacgaaggctatatcgctcgccagcaggatgagattgaa
aaacaactacgtaacgagaatacgttgctacctgccacgctggattatcgtcaggtttcc
ggtctgtcgaacgaagttatcgccaagctgaacgatcataaaccggcgtctatcggccag
gcatcgcgtatctccggcgttacgccagcggcaatctccattctgctggtatggctgaaa
aaacaaggtatgctgcgtcgtagcgcttga
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