Saccharothrix espanaensis: BN6_42910
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Entry
BN6_42910 CDS
T02404
Name
(GenBank) putative DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN6_42910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sesp03400
]
BN6_42910
Enzymes [BR:
sesp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN6_42910
DNA repair and recombination proteins [BR:
sesp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN6_42910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCH31574
UniProt:
K0K408
LinkDB
All DBs
Position
4694814..4696292
Genome browser
AA seq
492 aa
AA seq
DB search
MSGDLSEYRSKRVVGRTPEPLPAVEALLPRGSDDTFVIQEHHASSLHWDVRLERGGVLVS
WAVPKGLPAEPGTIRLAVRTEDHPVEYASFEGVIPKGEYGAGRMFVWDRGRYETVKWSDR
EVDVVLHGSRIEGEFVFFRRGSSGGGGSGRDWMVRRRHEAVRPDWVALPEWVEPMLATAA
SGLPARPEEFAFEFKWDGVRAVARVEGGRLRLVSRSGVDITAVYPELQGLGGALGSTQVL
LDGEVVAFAGGRPSFGALQQRLQASAAQARRLAARVPVTFLVFDVLHLDGASTVGLPYAR
RRELLEGLGLVGPHWLVPRAFPGAGAEVLAASREQGLEGVVAKRLDSRYVPGVRSAWWLK
ITDVAAQEVVIGGWRPGGGRRAGLVGSLLLGVPDGAGLVFVGSVGTGFGEAELPGLTERL
RGLEVSRSPFSSEVPRERARGARWVRPVLVGEVVHRQWTAEGRMRFPTWRGLRPDRVPEE
VRRGGGDGGAGR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggacctgtcggagtaccggagcaagcgggttgtggggcggacgccggagccg
ttgccggcggtggaggcgctgctcccccgtggttctgatgacacgttcgtgatccaggag
caccacgcgtcgagcctgcactgggatgtgcggttggagcggggtggggtgttggtgtcg
tgggcggtgccgaaggggttgccggcggagccggggacgatccggttggcggtgcgcacg
gaggaccacccggtggagtacgcgtcgttcgagggggtgatcccgaagggcgagtacggg
gcggggcggatgttcgtgtgggaccggggtcggtacgagacggtgaagtggagtgaccgc
gaggtcgacgtggtgttgcacgggtcgcggatcgagggtgagttcgtgttcttccggcgg
gggtcgtcggggggcgggggttcgggccgggactggatggtgcggcggcggcacgaggcg
gtgcggccggactgggtggcgttgccggagtgggtggagccgatgttggcgacggcggcg
tcggggttgccggcgcggccggaggagttcgcgttcgagttcaagtgggacggggtgcgg
gcggtcgcgcgggtggagggtggccggttgcggttggtgtcgcggtcgggtgtggacatc
acggcggtgtacccggagttgcaggggttgggtggggcgttggggtcgacgcaggtgttg
ttggacggtgaggtggtggcgttcgcgggtgggcggccgagtttcggggcgttgcagcag
cggttgcaggcgagcgcggcgcaggcgcggcggttggcggcgcgggtgccggtgacgttc
ctggtgttcgacgtgctgcacctggacggggcgtcgacggtggggttgccgtacgcgcgg
cggcgggagttgttggaggggttggggttggtggggccgcactggctggtgccgcgggct
tttccgggtgcgggggcggaggtgttggcggcgagtcgggagcagggcctggagggggtg
gtggccaagcggctggattcgcgttatgtgccgggtgtgcggtcggcgtggtggttgaag
atcacggacgtggcggcgcaggaggtggtgatcggcgggtggcggccgggtgggggcagg
cgggcggggttggtggggtcgttgttgttgggggtgccggacggggcgggtctggtgttc
gtggggtcggtggggacggggttcggcgaggcggagttgccggggttgaccgagcggttg
cgggggttggaggtgtcgcggtcgccgttctcgtcggaggtgccgcgggagcgggcgcgg
ggtgcgcggtgggtgcgtccggtgttggtgggtgaggtggtgcaccggcagtggacggcg
gaggggcggatgcggtttccgacgtggcgggggttgcggccggatcgggtgccggaggag
gtgcggcggggtggcggggacggtggtgcgggtcggtga
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integrated database retrieval system
