Saccharothrix espanaensis: BN6_42920
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Entry
BN6_42920 CDS
T02404
Name
(GenBank) putative DNA polymerase, LigD family
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN6_42920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sesp03400
]
BN6_42920
Enzymes [BR:
sesp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN6_42920
DNA repair and recombination proteins [BR:
sesp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN6_42920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DUF5753
Motif
Other DBs
NCBI-ProteinID:
CCH31575
UniProt:
K0JUQ8
LinkDB
All DBs
Position
4696135..4697163
Genome browser
AA seq
342 aa
AA seq
DB search
MRGGCVRCWWVRWCTGSGRRRGGCGFRRGGGCGRIGCRRRCGGVAGTVVRVGERRVRLTN
LDKVLYPEVGFSKAEVVDYYTRIAPVLLPHLAGRPLTVRRFPDGVAGESFFEKNAPSHAP
GWVRTVRIGTPGSSRGAEYADFVVVEELATLVWLANLAALELHVPQWVVGARGARHSPDL
LVFDLDPGAPATVVECCRVAERLRVVLVGDGLSPVVKTSGSKGLQVYAPVRVSSPGRTSE
YAKAVARRLAAESPEGVVWSMVRAARKGKVLIDWSQNNPAKTTVAPYSLRARPVPSVSTP
VTWDEVAGCRSPEELVFVADEVRARVARGGDLFVVGDAVGLP
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcggtgggtgcgtccggtgttggtgggtgaggtggtgcaccggcagtggacggcgg
aggggcggatgcggtttccgacgtggcgggggttgcggccggatcgggtgccggaggagg
tgcggcggggtggcggggacggtggtgcgggtcggtgagcggcgggtgcggctgacgaac
ctggacaaggtgctgtacccggaggtggggttctccaaggcggaggtggtggactactac
acgcggatcgcgccggtgctgctcccccacctggcgggtcggccgttgacggtgcggcgg
ttcccggacggggtggccggggagtcgttcttcgagaagaacgcgccgtcgcacgcgccg
gggtgggtgcggacggtgcggatcgggacgccggggtcgtcgcgtggtgcggagtacgcg
gatttcgtggtggtggaggagttggcgacgctggtgtggttggcgaacctggcggcgttg
gagttgcacgtgccgcagtgggtggtgggtgcgcgtggggctcggcactcccccgatctg
ctggtgttcgacttggatccgggtgcgccggcgacggtggtggagtgctgccgggtggcg
gagcggttgcgggtggtgttggtgggtgacgggttgtcgccggtggtgaagacgtcgggg
tcgaaggggttgcaggtgtacgcgccggtgcgggtgtcctctccggggcggacttcggag
tacgcgaaggcggtggcgcggcggttggcggcggagtcgccggagggtgtggtgtggtcg
atggtgcgggcggcgcggaaggggaaggtgttgatcgactggtcgcagaacaacccggcg
aagacgacggtggccccgtactcgttgcgggcgcgtccggtgccgtcggtgtcgactccg
gtgacgtgggacgaggtggcggggtgtcggtcgccggaggagttggtgttcgtggcggac
gaggtgcgggctcgggtggcgcgtgggggcgacttgttcgtggtgggtgatgcggtgggg
ttgccgtga
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integrated database retrieval system
