Salmonella enterica subsp. enterica serovar Typhimurium SL1344: SL1344_2474
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Entry
SL1344_2474 CDS
T01724
Symbol
shdA
Name
(GenBank) host colonisation factor (ShdA)
Organism
sey
Salmonella enterica subsp. enterica serovar Typhimurium SL1344
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Gene cluster
GFIT
Motif
Pfam:
PATR
Autotransporter
AC_1
ESPR
Motif
Other DBs
NCBI-ProteinID:
CBW18576
UniProt:
A0A0H3NEC1
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Position
complement(2625306..2631425)
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AA seq
2039 aa
AA seq
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MRNMYVVASELARGHSKVKAQVCASETHSPNQKSEYGQIIKATRAALACAVAAALGFFSP
LAMADNQVSYADAQPHVLDASTPPISYSGTDEGAALYVSGVATVGWQPTTVTGTGLVIET
SGGGADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYTQGISAADGSTLRLTDSTLTI
DGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQINVVAGNT
ATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDIT
GGNITSAGTGVYILASDARIDGATINADGDGIFITSKRKLDGYEDLNALTVSDANVTSKT
VALNIDGSTTINDPIELTNSTFTAPTAIKLGSKATIQAEKTMLTGNIVQTDASSSSLSLS
QGSTLTGSVDAMFTTLSLDDTSQRNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTL
TLQDGSQINATLDTANSAPIIKAANVTLDGTLNLSSTATFVAPETDEHFGSITLIDSQTA
ITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVD
AGSTFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAAL
GTGDVTIAESATLALSQGTLDNNVTGEGQIVKSGSDELIVTGDNNYSGGTTISGGTLTAD
HADSLGSGDIDNSGVLKVGEGELENILSGSGSLVKTGTGELTLSGDNTYSGGTTITGGTL
TADHADSLGSGDIDNSGVLKVGEGDLENTLSGSGSLVKTGTGELTLSGGNDYSGGTTIIG
GTLTADHADSLGTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLSGDNSYSGGTT
IIGGTLTADHADSLGTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLSGDNSYSG
GTTIIGGTLTADHADSLGTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLGGDNS
YSGATTITDGTLIAANVNALGSGNIDNSGTLILDANGAFELANVTTHSGATTALAAGSTL
DAGQFTQEDGSTLSIDLGAATDDAVITADSVALGGTLNVTGIGSVTDSWTPEAYTYTLIG
SDSAITTDFDDLTVAGMNREDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHG
TFTLSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEG
TLVAASTTALGTGLVDNNATLVLDADGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQ
QDGSTLNVELNSDSVQPLITGSSATLGGDLVVSDASLQARASDAEFQSFKLMDMTSDISG
DFTSLTMNLTDKPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFTLGAGDSF
EVTSVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYSGDTNVQEGTLWLSGDGSIGEMGS
QQAVNVASGATFGGSNGTTVNGKVTNEGTLVFGNSEETGAIFTLNGDLINMGTMTSGSSS
STPGNTLYVDGNYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYINGIGDGAQTT
NGIEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQSDDDDSGGDDTP
SDGGDDGGNVTPPDDGGDGGNVTPPDDGGDGGDVTPPDHGGDVAPQYRADIGAYMGNQWM
ARNLQMQTLYDREGSQYRNADGSVWARFKAGKAESEAVSGNIDMDSNYSQFQLGGDILAW
GNGQQSVTVGVMASYINADTDSTGNRGADGSQFTSSGNVDGYNLGVYATWFADAQTHSGA
YVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRYDIALSNGNTVSLTPQAQVVW
QNYSADSVKDNYGTRIDGQDGDSWTTRLGLRVDGKLYKGSRTVIQPFAEANWLHTSDDVS
VSFDDATVKQDLPANRAELKVGLQADIDKQWSVRAQVAGQTGSNDFGDLNGSLNLRYNW
NT seq
6120 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaaatatgtatgtcgtggcttcagaactggcgcgaggccacagcaaagttaaagcg
caagtatgcgcgagtgaaacccattctccaaaccaaaagtccgaatatggacaaataata
aaagcaacgcgcgcggcgctggcttgcgccgtggctgcggcgctcggatttttcagcccg
ctggctatggccgataatcaggtatcatatgctgatgcgcagccccacgttctggatgcg
tcaacgccgccgataagctattcgggcaccgatgaaggcgcggcgctatatgtctcgggt
gtcgccaccgtcggctggcagcccaccacggtcacagggacggggctcgtcattgaaaca
agcggaggcggggctgatgatccggatggcggtaagtatgtttccaacgccatttcgctg
gatcattacgctatccttgagcttaccgacgcgaagataaccactacgggtatttatacc
cagggtatttccgcagcggatggcagcacactgaggttaacagacagtacgctaacgatt
gacggcaatttcggcgtaatgacgttgtatacgggttcagaagcaacgctggacggtacc
atcgttgaggcagctaacagcagcagcgcgcaggtgcaacaaggcagtacgctgaacgtg
ctggacggtagcacaatcaccctggcgcaaggccagataaacgttgttgccggaaacacc
gcgacagacgagggttccaccctgaacctgtctgatagctcggtcagctctgcaggtacg
atgagcaccatccagggtaccaataaggccgctcttaatctcaccaacgcgaccataaca
cataccaatgccagcggcgcggcggtacaggccaataacgccactaccctggatattaca
ggcggcaacattacctctgccggtacgggcgtgtatattctggcgtcggacgccaggatc
gacggcgccaccatcaacgccgacggcgacggtatctttataaccagcaaaagaaaactc
gacgggtatgaggatctcaacgcgctgacggtcagcgacgcaaacgtcacctcaaaaact
gtcgcactgaacattgatggcagcacgaccattaacgaccccattgagctcaccaacagc
acctttacggcgccgaccgcgatcaaattaggcagcaaagcgactattcaggccgaaaaa
acgatgctgaccggcaacattgtccagactgacgcgtcatcgtcatcgctctctttaagc
caggggtccacgttaaccggtagtgtagatgcgatgtttactacgctgtcgctcgacgac
accagccagaggaacatgaccgacccgtcaaccgtcggcaatctgaccaacgacggcgat
attacgctgggcaacgcgagcggttcgacaggtacgctgctgacggtggacaataccctg
accttgcaggacggcagccagataaacgcgacgctggataccgccaacagcgcgccaatt
atcaaagccgccaacgtcacgctggacgggacgctgaaccttagctcaacggccaccttt
gtcgcgcccgaaaccgacgaacactttggatcgatcacgctgattgattcgcaaactgca
atcactaccgattttgacagcgtaacactggatgctgacacctccgctatgccggattat
ctgacgatcaacgcgggcgttgatgcgaatgataataccaactacgagttgtctacgggc
ttgagttggtacgcgggcgcaaattctgcgcgcgctgcgcatggcacttttaccgttgat
gcaggcagtacctttaccgtcaccagcgaactggacgaaaccacggcgacctccaactgg
aacggcagcaagctaaccaaacaaggcgacggcacgctgatcctcagcaacaccggcaac
gactacggcgatactgaaattgacggcggcattctggccgccaaagacgccgccgcgctc
ggcactggcgatgtgacgattgcagaaagcgcaacgcttgcgctgagccagggcacgctg
gataacaacgtgaccggcgagggccaaattgtcaaaagcggtagcgatgagctgatcgtg
accggcgataacaactacagcggcggcaccactatttccggcggtacgctgacggctgac
catgcggattcgctgggcagcggcgatatcgacaacagcggcgtgcttaaggtgggcgaa
ggcgagctggaaaacatcctttccggcagcggctcgctggtgaaaaccggcacaggcgag
ctgacgctaagcggcgacaacacttactccggcggcaccaccattaccggcggtacgctg
acggctgaccatgcggattcgctgggcagcggcgatatcgataacagcggcgtgcttaag
gtgggcgaaggcgatctggaaaatacgctttccggcagcggttcgctggtgaaaaccggt
accggcgagctgacgttaagcggcggcaacgattactccggcggcaccaccattatcggc
ggtacgctgacggctgaccatgcggattcgctgggtaccggagctgttgccaacagcggc
gtgcttcaggtcggcgagggcgagctggaaaatacgctttccggcagcggttcgctggtc
aaaaccggtacgggcgaactgacgttaagcggcgataacagttactccggcggcaccacc
attatcggcggtacgctgacggctgaccatgcggattcgctgggtaccggagctgttgcc
aacagcggtgtgcttcaggtcggcgagggcgagctggaaaatacgctttccggcagcggt
tcgctggtcaaaaccggtacgggcgaactgacgttaagcggcgataacagttactccggc
ggcaccaccattatcggcggtacgctgacggctgaccatgcggattcgctgggtaccgga
gctgttgccaacagcggtgtgcttcaggtcggtgagggcgagctggaaaatacgctttcc
ggcagcggttcgctggtcaaaaccggtaccggcgagctgacgttaggcggcgacaacagc
tattccggcgccaccactatcactgacggcacgctgattgccgccaacgtcaacgcgctg
ggcagcggcaatatcgacaacagcggtacgctgatactggatgccaacggcgcatttgag
cttgcgaacgtcaccacccatagcggcgccactaccgcgctggcagcgggcagcaccctt
gacgcgggccagttcacccaggaagacggcagtacgctaagtattgacctcggcgcggcc
accgacgacgccgtgattaccgccgacagcgtcgcgctgggcggcacgctgaatgttacc
ggcattggcagcgttacagacagctggacgcctgaggcatacacctacacgctgattggc
agcgacagcgccattacgaccgatttcgacgatctgaccgtcgcgggaatgaatagagaa
gatgttgacttcctgactatcgacggaaaagtcgatgaagcagacaacacccactatgat
ctgacggcctccctctcctggtatgcggacagagacaacgccactaccgacgcccacggc
acctttaccctgagcgaccctgacggcagctttaacgttgcggctacactgacagacgtt
gacgatacgctggatccgggtagcagatgggacggtaaatcgctgaccaaagaaggcgca
ggcacgctgatcctctctggcgacaacgactacagcggcggcaccaccatcaatgaaggt
acgctggtcgccgccagtacgacggcgctgggcaccggtctggtagacaataatgccacg
ctggtgctggacgcagacggtgaagtcagcgcggtgggcggcatcaccactcatagcggc
gcgacgacccaactggcgctcggcacctcgttggatctcggcgacagcgcgttaattcag
caagatggcagtacgctgaacgttgagctgaatagtgactcagtgcaaccgctgattacc
ggcagcagcgccacgcttggcggcgatttggtcgtcagcgacgccagcctgcaagcgcgc
gcctccgacgcggagttccagtcctttaaactgatggatatgaccagcgatatcagcggc
gactttaccagcctgacgatgaacctcactgacaagccggactatctgaccgtaaccggg
acaatcaatcctgaagatgcgtcagaatatctgcttaccgaagggctgagctggaatgcg
accgccacgtcagcgacgccagcacacggcacgtttaccctgggcgcaggcgacagtttt
gaagtcaccagcgtactgggcgataaaaccggcaacggcgactgggacggtaaatcgctg
accaaactgggcgcgggtaaattgacgctgagcggcgcgaacacctatagcggcgatacc
aacgtacaggaaggcacgctatggctgtccggagacggctcgattggcgagatgggcagc
cagcaggcggtgaacgtcgcctccggggcgaccttcggcggcagcaatggtacgaccgtt
aacggtaaggtgaccaacgaagggacgctggtcttcggcaacagcgaggaaacaggcgct
atcttcaccctcaatggcgatctgatcaacatggggacaatgaccagtggtagcagctcc
agcacgcctggcaatacgctttatgtcgatggcaattacaccggcaacggcggctcgctt
tacctgaataccgtcctgggcgacgatgattcggcaaccgataagttggtcattaccggc
gatgcttccggcaccaccgatctgtacatcaacggcatcggcgatggagcacagaccact
aacggtatcgaagtggtggatgttggcggcgtatcgaccagcgatgcgtttgagctaaaa
aatgaggttaacgccggtctgtatacctaccgtctgtactggaatgaaagtgacaacgac
tggtatctggcgtcaaaagcacagtctgatgatgacgacagcggcggtgatgacacgcct
tcggatggcggtgacgatggcggtaatgtcacgcctccggacgacggcggcgatggcggt
aatgtcacgcctccggacgacggcggcgacggcggcgatgtcacgcctccggaccacggc
ggcgatgtcgcaccgcagtaccgtgcggatatcggcgcgtacatgggcaaccagtggatg
gcgcgcaacctgcaaatgcagaccctctatgaccgcgagggcagccagtatcgtaatgcc
gatggcagcgtatgggcgcgcttcaaagcgggtaaagcggaatccgaggctgtcagcggc
aatatcgatatggacagcaactactcccagttccagttaggcggcgacattctggcctgg
ggtaacggccagcagagcgttaccgttggcgtcatggcgagctacatcaacgccgatacc
gacagcaccggtaaccgtggcgcagacggtagccagttcaccagtagcggcaacgtagac
ggctacaaccttggcgtctatgccacctggtttgccgatgcccaaacgcatagcggcgcg
tatgtcgacagctggtaccaatatggtttctacaacaacagcgtagagagcggtgatgcg
ggatctgaatcttatgattcaaccgctaacgccgtctcgctggaaactggttatcgctac
gatattgcgcttagcaacggtaatactgtcagtctgacgccgcaggcgcaggttgtctgg
cagaattactcagcggatagcgtgaaggataactacggcacccggatcgatggtcaggat
ggcgacagttggacaacgcgtctgggtctgcgtgttgacggcaagctgtacaaaggcagc
cgtacggttatccagccgtttgctgaagctaactggctgcacaccagcgatgatgtgtcg
gtatcgtttgatgatgctacggtgaaacaggatcttccggctaaccgtgcggagctgaaa
gtgggtctgcaggcagatatcgataagcagtggagcgttcgcgctcaggttgccgggcag
actggcagcaatgactttggcgatctgaacggtagcctcaatctgcgctataactggtaa
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integrated database retrieval system
