Sinorhizobium fredii USDA 257: USDA257_c15160
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Entry
USDA257_c15160 CDS
T02188
Symbol
ykoU1
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
Organism
sfd
Sinorhizobium fredii USDA 257
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFL50106
UniProt:
I3X2K0
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Position
1604974..1607436
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AA seq
820 aa
AA seq
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MATSKLEAYRKKRDFSKTPEPVGSPAGGGNRFVVHKHHATADHYDLRLEVGGVLKSWAVP
KGPSLNPADKRLAVETEDHPIEYIDFEGVIPEGEYGAGPMIVWDTGVWAPMEDVQKSLQT
GAFKFRLAGEKLNGGWMLTRLKPRPGEENQTHWLLFKERDPAADPSTDILAARPESVKSG
RRIEELLEKAKPAAKAVKLRPGALAGATKATAPTRIEPQLAIQTAIPPGSAPGREVWLHE
IKFDGYRTMAHLSGDEVRLITRGGLDWTRRYGDVPEAIRRLPCRDAVIDGEIVALDEEGI
SRFALLQEALSTGADNRLVFYAFDLVYLDGWSLVNVPLEKRKALLKQLLAAQLSSRSAIQ
FSDHVVGDGRAFYEHASELGLEGVISKRATAFYQSGRSKTWTKTKALKAEDFVIAGYTMS
EAAEGIAALALGEWVDGELQYRGKVGTGFDAAMLKQLLARLEPLRAGAAKIEGAPKEINW
VRPVLTARIHYGNRTTDNALRHPVFKGLREVELTAPVSGQRKRLISDADLASISITNPTR
RLFGKSGPTKLDLAVYYAMVGDFMLPHILGRPVSLVRCPTGKFADCFFQRHPFTGMPPSV
ASFEAMSSEGETKRYLSVEDAKGYLALAQFGVVEFHSWGSTRARLERPDRVVFDLDPGEG
IGWREVVEAAVHIKGELEALGLIPLVKTSGGKGVHVVVPIRPKLDWKKVHKATGDIATHL
ASTAPESFITTMSKGKRVKRIFIDFHRNARGHTAAAPYSLRARTNLPASTPLSWTDLETI
DAPEDLNYSSLPGLLAMSGDPWADIDDCARDLPMLANAEK
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccaagctagaagcctaccgcaagaagcgggatttttcgaagacgccggag
ccggtcggcagccccgccggcggcggcaaccgtttcgtcgtgcacaagcatcatgcgaca
gcggaccattatgacctgagacttgaggtcggcggcgtgttgaagagctgggccgtgccc
aagggcccctcgctcaaccccgccgacaagcgtctggcggtcgagaccgaagatcatccg
atcgaatatatcgacttcgagggcgtcatcccggagggcgaatatggcgccggcccgatg
atcgtctgggacaccggcgtatgggcgccgatggaggacgtccagaaaagcctccagacc
ggcgccttcaagtttcgcctggccggtgaaaagctgaacggcggctggatgctgacgcgg
ctgaagcccaggccgggggaagagaaccagactcactggcttctcttcaaggaacgcgat
cctgccgccgatccctccaccgacattctcgccgcccggccggaaagcgtcaaatccggc
cggcggatcgaggagcttctcgaaaaggcgaagccagcggccaaggcggtgaagctgagg
ccgggcgcccttgccggtgcgacaaaggcaacggcaccgacacgcatcgagccgcagctt
gccatacagacggcgattccgcctggtagtgcccccgggcgcgaggtctggctgcatgag
atcaagttcgacggctaccgcacgatggcgcatctatccggcgacgaggtgcgcctgatc
acccgcggcggcctcgattggacaaggcgctatggcgatgtgcccgaagccattcggcgg
ctgccgtgccgcgacgctgtcatcgacggcgaaatcgtcgcgctcgacgaggaaggcatc
agccgtttcgcccttcttcaggaagcgctgtccaccggcgccgacaaccggctggtgttc
tatgccttcgaccttgtctatcttgacggctggagcctcgtgaatgtcccgctcgagaaa
cgcaaggcgctgctcaaacaactgctcgccgcgcaactgtccagccgctcggccatccag
ttcagcgatcacgtcgtcggtgatggacgcgccttttacgagcatgcgtcggaactgggc
ctcgagggggtcatatcgaaacgtgcgacagctttctatcagagcgggcgctccaagacc
tggaccaagacgaaggcactgaaggccgaagacttcgtgatcgccggctataccatgtcc
gaggcggccgaagggatcgccgcgctggcgctgggcgagtgggtggacggcgaactgcag
tatcgcggcaaggtcggcacgggtttcgacgcggccatgctcaagcagttgctggcacga
ttggaaccgctgcgcgccggggccgccaagatcgagggggcgccgaaggagatcaactgg
gtccgtccggtgctgacggcgcgcattcactacggcaatcgcacgacagacaacgcgctc
cgtcatcccgtgttcaaggggcttcgcgaggtcgaactcacggctcccgtttcgggccag
cgaaaacggctgatttccgacgcggacctcgccagcatctcgatcaccaacccgacccgt
cggctgttcggcaaatccgggccgaccaagctggatctcgccgtctactacgccatggtc
ggcgatttcatgctgccgcatatcctcggacgcccggtttcgctcgtccgctgcccgacg
ggcaagttcgcggactgcttcttccagcggcaccccttcaccggcatgccgccttcggtg
gcgagcttcgaagccatgagttcggagggcgagacgaaacgctacctttcggtcgaagac
gccaaaggctacctggcactggcgcaattcggcgtggtcgaattccattcctggggctcg
acacgggcgcggctcgagagacccgaccgggtcgtcttcgacctcgatcctggcgagggc
atcggctggcgcgaagtggtcgaggcggccgttcacataaagggggagctcgaggcgctc
ggcctcattcctctcgtcaagacctcgggcggcaagggcgtccatgtcgtcgtgccgatc
cgcccgaagctcgactggaagaaagtgcacaaggcgaccggcgatattgccacccacctc
gcctcaacggcgcccgaaagcttcatcaccacgatgagcaagggcaagcgcgtgaagcgc
atcttcatcgacttccaccgcaacgcccgcgggcacacggcagcagcaccctattcgctt
cgcgcccgcacgaatctgccggcctctacgcccttaagctggaccgatcttgagactatc
gacgctcccgaggatttaaattattcttcgttacctggcctgttggccatgtccggcgat
ccctgggccgatatcgacgactgtgcacgggatttgcctatgcttgccaatgcggaaaag
taa
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