Sinorhizobium fredii USDA 257: USDA257_c52060
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Entry
USDA257_c52060 CDS
T02188
Symbol
ykoU3
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
USDA257_c52060 (ykoU3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c52060 (ykoU3)
Enzymes [BR:
sfd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
USDA257_c52060 (ykoU3)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
USDA257_c52060 (ykoU3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AFL53731
UniProt:
I3XCX5
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All DBs
Position
5399137..5401734
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AA seq
865 aa
AA seq
DB search
MAARSEPLSEYNRRRDFSKTREPKGAVARTHPGQKRFLVQKHDATRLHYDFRLEWEGVLK
SWAVTRGPSLNPEDKRLAIRTEDHPLAYGDFEGTIPEGEYGGGTVMLWDTGWWEPEDDPE
KGLKKGKLAFRLHGSRMKGGWALVRMRPRDGEKRESWLLVKQDDDVASEDGESLIKQHVV
SARTGRTMDEIAEGRGEKRARVWHSNKSTAANLNAGAVSQDEGRSKRRARKSSVKPPAFR
PPQLATLVTKAPAGDDWLNEAKFDGYRLIAAVGGGIARCYTRNGLDWTEKFPTIAAALAE
LDCDSALIDGEVVALADQGSNFSALQKALRTGASMRFYAFDLIELDEKDLSRRPLVERKE
KLAALLDSLGTTATIQYSEHVRGNGEHILAAICKAGQEGIIAKEAKAPYRSGRTRSWLKV
KCTKRQEFVIGGYTPSTKKGRAFASLLLGTFEGGKLIYRGGVGTGFGEKVMEELAAAFAK
RQRPTSPFDQVPRERSRDAVWLKPDLVAEVDFAEFTADGHIRHGSFEGLREDREAKTVKL
ETAKPTDAEPGAAKGKSSAKTRTASPTKGDADILGVHISHPDRILFEGQGITKIDLARYY
AVVAERMLPFAADHPVSLVRCPQGGQRQCFFQKHANEGFPEAIREVPITESSGETENYMY
VHDAKGLVAAVQMGTLEFHIWGATIDRLEKPDRLVFDLDPDPSVDFATVKAAATTLRDEL
AEIGLKTVAMVTGGKGVHVIVPLRPHAEWDEAKGFAKRLAQTFAERDPEHFVATMSKAKR
KGRIFIDWLRNDRGATAIAPYSTRARAGGPVATPVSWDELEALDAANTFHIADIIERIEA
GTDPWREIGEIKQSLTKKMLNSTIS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgcagtgaaccgctttccgaatacaatcggcgccgcgatttttcgaagacc
cgcgaaccgaaaggcgcggttgcccgcacgcatcccggccagaagcgctttctcgtccag
aagcacgacgcgacccggctgcactacgatttccgccttgaatgggagggtgtcctgaag
agctgggcggtcacccgcggaccgagcctcaacccggaggacaagcgtcttgccatccgc
accgaggatcaccccctggcctatggcgacttcgaggggacgatcccggaaggcgagtat
ggcggcggcacggtgatgctttgggataccggctggtgggaaccggaagacgatcccgag
aagggcctgaaaaaaggcaagctcgccttccgcctgcacggcagccgcatgaagggtggc
tgggcgctggtgcgtatgcgcccgcgggacggcgaaaagcgggaaagctggctcttggtc
aagcaggacgacgatgtcgcgtcggaggacggcgagagtctcataaagcaacatgtggtc
agcgcgcggaccggccgaacgatggacgagatcgccgagggccgcggcgagaagcgagca
cgcgtctggcattcgaacaaaagcacggccgccaatctcaacgccggcgcagtttcgcaa
gacgaaggtcggagcaagcgccgggcgcgaaaatcctccgtcaaaccacccgccttccgg
ccgccgcagcttgccaccctggtcacgaaagcgcccgctggcgacgactggctgaacgaa
gcgaagttcgacggctaccgcctgatagccgccgtcggcggcgggatcgcccgctgctat
acgcgcaacggtctcgattggaccgagaagttcccgacgattgccgccgcccttgcggaa
ctcgactgcgactccgcgctgatcgacggcgaggtggtggcgctggcggaccaagggtcg
aatttctccgccctgcagaaggccttgagaaccggtgcgagcatgcgtttctacgccttc
gacctgatcgaactcgatgaaaaggacctcagccgccggccgctcgtcgaaaggaaagag
aagctggcggcgctgctcgactcgctcggcaccacggcgaccatccagtacagcgagcat
gtccgcggcaatggcgagcacatcctggcggcaatatgcaaggccggccaggaaggcatc
atcgccaaggaggcgaaggccccctaccgcagcggccgcacgcgaagctggctgaaggtg
aaatgcacgaaacgccaggaattcgtcatcggcggctacaccccctcgaccaagaaaggg
cgcgccttcgcctcgcttcttctcggcaccttcgagggcggcaagctgatctatcggggc
ggcgtcggcaccggcttcggcgaaaaggtgatggaggagcttgccgcggcctttgcgaag
cgccaacgtccgacatcgcccttcgatcaagtgccgcgcgaaaggagccgagatgccgtc
tggctgaagcccgacctcgtcgctgaggtggacttcgcagagttcaccgctgacggacat
atccgccacggctcgttcgagggattgcgcgaggacagggaggccaagaccgtgaaactg
gaaacagcgaaaccgacagacgccgagccgggggccgcgaagggcaaatcctcagccaag
acccgtacggcgtcgcccaccaagggcgatgccgatatcctcggcgtccacatctcgcac
cccgaccggatccttttcgagggtcagggcatcaccaagatcgatctcgcccgctactat
gccgtcgtcgcggagcggatgctgcccttcgccgcagaccatcccgtttcgctggtgcgt
tgcccccagggcgggcagcggcaatgtttcttccagaagcatgcaaacgagggtttcccg
gaggcgatccgggaagtgccgatcacggaatcatcgggcgagaccgaaaactacatgtat
gtccacgacgccaagggtctcgtcgccgccgtgcagatgggcacgctcgagtttcacatc
tggggtgcaacgatcgaccgcctggaaaaacctgatcgcctggtcttcgacctcgatccc
gatccgagcgtcgacttcgccacagtgaaggcagccgccaccacgctccgcgacgaactt
gccgagatcggcctcaagacggttgccatggtgaccggcggcaagggcgtccacgtcatc
gtgccgcttcgtccgcacgccgaatgggacgaggcgaagggcttcgccaagaggcttgcg
cagactttcgccgagcgcgaccccgagcatttcgtcgccaccatgtccaaggcaaagcgc
aaggggcggatcttcatcgactggctgaggaacgaccgcggcgccaccgcgatcgccccc
tactccacccgcgcccgcgcaggcggacccgtcgccactccggtcagctgggacgagctc
gaagccctcgacgccgccaataccttccacatcgccgacatcatcgagcgcatcgaggcc
ggcaccgatccctggcgcgagatcggcgagatcaagcagtcgctgacgaagaaaatgctg
aattcgacaatcagctag
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