Streptomyces ferrugineus: IM697_30100
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Entry
IM697_30100 CDS
T07428
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfeu
Streptomyces ferrugineus
Pathway
sfeu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IM697_30100 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfeu03400
]
IM697_30100 (ligD)
Enzymes [BR:
sfeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IM697_30100 (ligD)
DNA repair and recombination proteins [BR:
sfeu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IM697_30100 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
baeRF_family7
baeRF_family6
Motif
Other DBs
NCBI-ProteinID:
QOV34368
UniProt:
A0A7M2SFW7
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All DBs
Position
complement(6694693..6695631)
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AA seq
312 aa
AA seq
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MTGEGATKKVRAGRRTVDVKRVGKVLFPGHGGAKEYTKGDLVDYYRSVAAFMLPHLRGRP
LMLERHPDGLDGQKFMQKNTPEYYPDWITRVELPKEDGTVCHTVCDDTATLVYLADQACL
TLHRFLSRIDGTGGIDRPDRMVFDLDPAGDDFEQVREAAGLLGELLDELELPSGLMTTGS
RGLHVVVPLNGREEFDGVRDAARDIADALAAAHPDRLTTAARKKDRGDRLYLDVQRNAYA
QTAVVPYTVRARPGAPVATPLAWSELDDPDLDARRWSIADAVQQARTDPWSGVPRRGRAL
GPARRRLDALRD
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgacgggcgagggcgccacgaagaaggtgcgggcgggccgccgtacggtcgacgtcaag
cgcgtcggcaaggtgctctttcccggccacgggggcgcgaaggagtacaccaagggcgat
ctcgtcgactactaccggtccgtcgccgcgttcatgctgccgcacctgcggggccggccg
ctgatgctggagcggcaccccgacgggctcgacgggcagaagttcatgcagaagaacacc
ccggagtactacccggactggatcacccgcgtggaactgcccaaggaggacggcaccgtc
tgccacacggtgtgcgacgacaccgccaccctcgtctacctcgccgaccaggcctgtctc
accctgcaccgcttcctctcccgtatcgacggcaccggcggcatcgaccgtcccgaccgg
atggtcttcgacctcgatccggccggggacgacttcgagcaggtccgcgaggcggccggg
ctcctcggcgaactgctcgacgagctggagctgccctccgggctgatgaccaccggctcg
cgcgggctgcatgtcgtcgtcccgctgaacgggcgggaggagttcgacggcgtacgcgac
gccgcgcgtgacatcgccgacgccctcgccgccgcccacccggaccggctcaccaccgcc
gcccgcaagaaggaccgcggtgatcgtctctacctcgacgtgcagcgcaacgcctacgcc
cagacggcggtcgtgccctacaccgtccgggcccgccccggcgccccggtggccacgccc
ctcgcctggtccgagctggacgacccggacctggacgctcgtcgctggagcatcgccgac
gccgtgcagcaggcgcgaaccgatccctggtccggggtgccgcgccgcggccgcgccctg
ggcccggcgcggcgcaggctcgacgcactgcgggactga
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integrated database retrieval system
