Streptomyces formicae: KY5_6844
Help
Entry
KY5_6844 CDS
T05416
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfk
Streptomyces formicae
Pathway
sfk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KY5_6844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfk03400
]
KY5_6844
Enzymes [BR:
sfk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KY5_6844
DNA repair and recombination proteins [BR:
sfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KY5_6844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ATL31862
UniProt:
A0A291QJW0
LinkDB
All DBs
Position
7969802..7970743
Genome browser
AA seq
313 aa
AA seq
DB search
MDDVRKVRAGRRTVRLNRPDKILFPASGDGNGRADGGREYTKADLFDYYRSVAPFMLPHL
RGRPLMLERHPDGLEGPRFMQKDTPDHYPDWITRAEVAKRGGTVTHIVCDDTATLLFLAD
QACLTLHRWLSRTGRVEHPDRLVFDLDPAKDDFGAVRVAALLLGELLDQVGLPSALMTTG
SRGLHVVVPLNGHHDFDDVRAFAKDVAETLAAARPEALTTAVRKEERGDRLYLDVQRNAY
AQTAVAPFSVRSAPGAPVAVPLAWEQLDAPATHARRWNIEDAVEQARTDPWAGVPRSGRA
LGPARRKLRALRD
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgtacggaaggtgcgggcagggcgccgcaccgtacggctgaaccggccggac
aagatcctcttcccggcctccggggacggcaacggccgcgcggacggcggccgggagtac
acgaaggccgacctcttcgactactaccggtccgtcgcccccttcatgctgccgcacctg
cgcggccgccccctgatgctggagcgccaccccgacggccttgagggcccccgcttcatg
cagaaggacacccccgaccactacccggactggatcacccgcgccgaggtggccaagcgg
ggcggcaccgtcacgcacatcgtgtgcgacgacaccgcgacgctcctcttcctcgccgac
caggcctgtctgaccctgcaccgctggctctcgcgcaccggccgcgtcgagcaccccgac
cggctcgtcttcgacctcgaccccgccaaggacgacttcggcgccgtgcgtgtcgcggcc
ctgctgctcggcgagctcctcgaccaggtgggcctgccgtccgccctgatgacgacgggc
tcgcgcgggctgcacgtcgtcgtgccgctcaacggccaccacgacttcgacgacgtgcgc
gccttcgcgaaggacgtcgcggagacgctcgccgccgcccgtcccgaggcgctcaccacg
gccgtacgcaaagaggagcgcggcgaccggctctacctcgacgtgcagcgcaacgcctac
gcgcagaccgccgtcgcccccttctcggtgcgctccgcgccgggcgcgccggtcgccgtg
ccgctcgcctgggagcagctcgacgcccccgcgacgcacgcccgccgctggaacatcgag
gacgccgtcgagcaggcccgcaccgatccgtgggcgggcgtcccgcgctcggggcgcgcc
ctcggcccggcccgccgcaagctgcgcgcgctgcgcgactga
DBGET
integrated database retrieval system