Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_00104
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Entry
SPHFLASMR4Y_00104 CDS
T04949
Symbol
gcvPB
Name
(GenBank) putative glycine dehydrogenase (decarboxylating) subunit 2
KO
K00283
glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:
1.4.4.2
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Pathway
sfla00260
Glycine, serine and threonine metabolism
sfla00630
Glyoxylate and dicarboxylate metabolism
sfla00785
Lipoic acid metabolism
sfla01100
Metabolic pathways
sfla01110
Biosynthesis of secondary metabolites
sfla01200
Carbon metabolism
Module
sfla_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
SPHFLASMR4Y_00104 (gcvPB)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SPHFLASMR4Y_00104 (gcvPB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
SPHFLASMR4Y_00104 (gcvPB)
Enzymes [BR:
sfla01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
SPHFLASMR4Y_00104 (gcvPB)
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GFIT
Motif
Pfam:
GcvP2_C
Aminotran_5
GDC-P
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
ASK86897
UniProt:
A0A220W251
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Position
120524..122107
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AA seq
527 aa
AA seq
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MSMLSEGRPTRQEDNLNMTDDASITTHTGNRALMVDEPLIFEIGSPDRSGVDLPDAPQVE
NRLGGLEREAPIAIPGLSEGEMVRHYTRLSRQNYAIDVGLFPLGSCTMKHNPRLNEKMAR
LKGFADIHPLQPVDSVQGALGVINELAVWLIKLTGMHGVAMTPKAGAHGELCGILCIRAA
LEARGDAREVILVPESAHGTNPATAAFAGYKVEDIPANAAGRVDLEALKARLGPDVAGVM
ITNPNTCGLFEPDMKAISDAVHEAGGYVYCDGANFNAIVGKVRPGDLGIDAMHINLHKTF
STPHGGGGPGSGPVVLSEALAPYGPLPFTERHADGHITLVEEETVEDRHPHTFGRMSAFH
GQMGMFTRALTYILSHGADGLAQVAEDAVLNANYILRSLEDVLEAPFAHSGPCMHEALFS
DKGFTNDLTTLDLAKGMIDEGYHPMTMYFPLVVHGAMLVEPTETESKAAIDQFIGAFRSV
AERAKAGDETLKSAPYFAPRRRLDETQAARKPILVWTEDEEFAQAAE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgctctccgaaggacgcccgaccagacaggaagacaatctgaacatgaccgac
gatgcgtccatcactacccacaccggcaaccgcgccctgatggtcgacgaaccgctgatc
tttgaaatcggttcgcccgatcgcagcggcgtcgatcttccggatgctccgcaggtcgaa
aaccgtcttggcggtctcgaacgcgaagcgccgatcgccatccccggattgtcggaaggc
gagatggtgcggcactataccaggctcagccgccagaattacgcgatcgacgtcggcctg
tttccgctcggcagctgcaccatgaagcacaatccgcgactcaacgagaaaatggcgcgg
ctcaagggctttgccgacatccatccgttgcagccggtcgacagcgtgcagggtgcgctc
ggcgtgataaacgaactggcggtctggctgatcaagctgaccggcatgcacggcgtggca
atgacgcccaaggccggcgcgcatggcgagctttgcggtatcctctgcatccgcgccgct
ctcgaagcgcgcggcgatgcgcgcgaagtgatcctggtgccggaaagcgcccatggcacc
aatccggccaccgcagccttcgccggttacaaggtcgaggatattcccgccaatgccgcg
ggccgtgttgatctcgaagcgctgaaggcgcgtctgggaccggatgtcgccggtgtgatg
atcaccaatcccaatacctgcggcctgttcgagccggatatgaaggcgatttccgatgcg
gtccatgaagccggcggctatgtctattgcgatggcgcgaatttcaacgccatcgtcggc
aaggtccgtcccggcgatctcggtattgatgcgatgcacatcaatctgcacaagaccttc
tccaccccgcatggcggcggaggcccgggttccggtccggtggtattgtccgaagcgctg
gcgccttacgggcctttgccatttaccgaacgccatgccgacggtcatatcactttggtc
gaggaagagacggtcgaggaccggcatccgcatacattcggccgtatgagcgcctttcat
ggccagatgggcatgtttacgcgggctctgacctatatcctgagtcacggcgcagacggc
ctggcacaggtggcggaagatgcggtgctcaatgccaattatatcctgcgcagcctggag
gacgtactcgaggcgcccttcgcgcacagcggtccctgcatgcacgaggctttgttctcg
gacaagggcttcaccaacgacctgaccacgctcgatctcgccaagggcatgatcgacgaa
ggctatcacccgatgaccatgtatttcccgctggtggtgcatggcgcgatgctggtcgag
ccgaccgagaccgagagcaaggcggcgatcgaccagtttatcggcgccttccgctcggtg
gccgaacgggccaaggcgggcgacgaaacactgaaaagcgcgccttattttgctccgcgg
cggcggctggatgaaacgcaggccgcgcgcaagccgatattggtgtggacggaagacgag
gaatttgctcaagctgcggaataa
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