Scleropages formosus (Asian bonytongue): 108918504
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Entry
108918504 CDS
T04919
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108918504
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108918504
09142 Cell motility
04820 Cytoskeleton in muscle cells
108918504
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108918504
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108918504
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108918504
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108918504
Hyaluronan
Extracellular matrix or blood plasma proteins
108918504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
SelP_C
Sde182_NH-like
Med25_VWA
Motif
Other DBs
NCBI-GeneID:
108918504
NCBI-ProteinID:
XP_018581348
LinkDB
All DBs
Position
14:complement(341084..362655)
Genome browser
AA seq
1030 aa
AA seq
DB search
MSTSQGSGYNMHRSIIYLSVFLAVAVWGQSSKECLVKIECPINLYFVLDTSETIALQEPP
PGSLVNSIKEFTKDFAEKLEDKNYKGQVQITWSVGGLHYSQDQIVFSPITNKGDFTKRLE
NITYIGKGTFTDCALDRMTKEMVSHRGSLVHRGDNDVQLGKKTADFAVVITDGHVTGNPC
GGIKASADRARDEGIKIFSVAASQKIDELGLREAASSPVDFFRDHYIAVTFADNNPKLMT
STSDTIIKRILHQAYKECYKLSCLERPGPPGPRGHKGQKGAKGDSGGPGPKGEKGRQGDP
GIEGPIGRPGAKGAPGHKGEKGDTGFQGSKGVAGQSGRNGTDGQKGKPGRIGPHGCKGDP
GEKGSDGFPGEPGDDGAPGFDGEKGDPGRPGRPGPPGEKGEEGPKGERGSPGSPGYPGQK
GSLGPPGEPGPKGEPGRRGDIGLKGSPGRPGPKGEKGEPGPEGQRGLPGESGNKGTKGDI
GLPGPRGLPGDSGVQGRNGSRGEPGDPGPRGDPGPRGPKGDPGRPGYSYPGPRGPTGDRG
EKGKPGAQGSRGNCGQKGEPGTKGLPGEPGEPGPDGEPGPRGPKGEPGNDGDRGLPGDPG
LTECDVMTYVRETCGCCDCEKVCGALDIVFVIDSSESVGLSNFTLEKNFVINTLNRMGSI
AEDPAAETGTRVGVVQYSHNGTFQVIHLNDSKINSLSAFKEAVKNLEWIAGGTWTPSALK
FAYDNLIRGSQRAKARVAAVVITDGRYDPRDDDSLLRYLCESPGVDVNAIGIGDVFHQGQ
DNETLSSITCNKKDRVKSLTSFTELVAEEFIDQIETVLCPDPLIVCPDLPCQMEPSVASC
VQRPVDIIFMLDGSERMGLENFKHARSFIEAVVNRLTLARGDSDSLHTRMALLQYGDKNT
DRVAFPLTSELDTIMEGLRRMTYIDSSSNVSSAIMYAIDNVVRRDQVRRDAELSFIFITD
GFTAIEGLDESLGNIRKNGGVSTVVAMGGEVDQEVLMKLALGDKSAIFKGNNYMVLSQPS
FFERFIRWIC
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgtcgcagggcagtggatacaacatgcatcgaagcattatctacctgagcgtt
ttcttggcagtggccgtgtggggtcagagcagtaaagaatgccttgtgaagatcgagtgc
cccatcaacctctactttgtccttgatacctccgagaccatcgctctccaagagcctccg
cccggaagcctggtaaatagcatcaaggagttcacaaaggactttgccgaaaagctggaa
gacaagaattacaagggacaagtgcagatcacctggtctgtgggtggtctgcattactcc
caggatcagattgtcttcagcccaattaccaacaagggcgattttacaaagagacttgaa
aacattacatatatagggaagggcaccttcactgattgtgccttagacaggatgaccaag
gagatggtgagtcacagagggagcttggtccaccgcggtgataatgatgtccagttgggg
aagaagaccgctgactttgctgtagtcatcacagacggtcacgtcacaggcaacccttgc
ggtggcatcaaggcgtcagcggaccgggcgagggatgagggaatcaaaatcttctccgtg
gcagccagccagaagatagatgagctcggccttagggaggcagccagctccccggtcgac
ttcttccgcgaccattacatcgccgtcacattcgctgacaacaaccccaagcttatgact
tcaacaagtgacaccatcatcaaaagaatacttcatcaggcctataaagagtgctacaaa
ctgagttgtttagagagaccaggccctccaggaccaaggggtcacaaaggtcagaaggga
gctaaaggagacagcggtggtcccggccccaaaggtgaaaaaggtcggcagggtgaccct
ggtatcgaaggtccaattggtcgtcctggtgcaaagggtgcacctggtcataaaggtgaa
aagggtgacactggatttcaaggcagcaagggtgtagctggtcaatcaggccgaaatggc
accgatggtcagaagggtaaacctggacgaattggacctcatggctgcaaaggagatcca
ggtgaaaagggatctgatggttttcctggcgaaccgggcgatgatggagcgcctggattt
gatggagaaaagggagaccctggtcgccctgggagaccaggaccccctggtgaaaaagga
gaagaaggaccaaagggtgagcgaggaagtccaggttcacccgggtaccccggtcagaag
gggtctttaggaccaccaggagaacctgggccaaaaggggaacctggtagaaggggggac
attggactgaagggatcacctggacgtccaggaccgaaaggagagaagggtgagcctggg
ccagagggacaaagaggacttccaggggaatcaggaaataaaggaaccaagggagatatc
gggctaccgggaccaaggggtcttccaggagacagtggggtacaagggagaaatggttcc
cgtggagaaccaggcgatcctgggcccaggggagatcctggtccacgaggacccaagggt
gatccaggaaggcctgggtacagctatcccggaccaagagggcccacgggcgaccgtggt
gaaaaaggaaagcctggtgcccaggggagcagaggcaactgtgggcagaaaggagaacct
ggcactaaaggcctgccaggtgaaccgggtgagccaggacctgatggcgagcctggacca
agaggacccaagggggaacctggaaatgatggagaccgtggcctcccgggtgaccctggc
ctcactgaatgtgatgtcatgacctacgtccgggaaacgtgcggttgttgcgactgcgag
aaggtctgtggagccctcgacatcgtctttgtgatcgacagttcagagagcgtgggcctg
tccaacttcaccctggaaaagaattttgtcatcaacacccttaacaggatgggctccatc
gcagaggaccctgctgctgagacaggaacacgtgttggtgtggttcagtacagccacaat
ggcaccttccaggtcattcatctcaacgattccaaaatcaactccctctctgccttcaag
gaggcggtgaagaacttggagtggattgccgggggcacctggacgccgtcagccctaaaa
ttcgcctatgacaatctgatacggggcagccagcgggcaaaggccagggtggcagctgtg
gtgatcacggacgggcgttacgacccacgtgacgatgactccctgttgcgctacctctgc
gagagccctggggtggatgtgaatgccattggcatcggtgacgtgttccatcagggccaa
gacaatgagaccctgtcatccatcacgtgtaataagaaggaccgcgtcaagtccctgacc
agcttcactgagctggtggcagaggagttcattgaccagattgagaccgtgctctgcccc
gatccactaattgtgtgcccagacctcccctgccaaatggaaccttctgtggccagctgt
gtccagcgtcccgtggacatcatcttcatgcttgatggctcagagcgaatgggtctggag
aacttcaaacatgctcgcagcttcattgaggccgtggtcaaccgcctcacgttggctcgg
ggagactcagacagcctccacacccgcatggccttgctgcagtatggagacaagaacact
gaccgtgtggccttcccgctgaccagtgagctcgacaccatcatggagggcctacgtaga
atgacctacatagacagctcgtccaatgtgagctctgctatcatgtatgccattgacaac
gtggtgaggcgcgaccaggtccgccgtgatgctgaactatccttcatcttcatcaccgat
ggcttcacggccatcgaaggtctggacgagagccttggtaacattcgcaagaacggaggc
gtctccactgtggtcgccatgggtggcgaggtggaccaggaggtgctgatgaagctggca
ctgggtgataagtccgccatattcaaggggaataattatatggtgctttcccaacccagc
ttctttgagcgcttcatccgctggatatgttag
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integrated database retrieval system
