Scleropages formosus (Asian bonytongue): 108919420
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Entry
108919420 CDS
T04919
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03013
Nucleocytoplasmic transport
sfm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108919420 (pnn)
03015 mRNA surveillance pathway
108919420 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108919420 (pnn)
03041 Spliceosome [BR:
sfm03041
]
108919420 (pnn)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108919420 (pnn)
Spliceosome [BR:
sfm03041
]
Complex C
Other components
EJC/TREX
108919420 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
FlaC_arch
Motif
Other DBs
NCBI-GeneID:
108919420
NCBI-ProteinID:
XP_029114321
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Position
15:16817909..16823077
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AA seq
662 aa
AA seq
DB search
MAVAVRTLQDQLEKAKESLKNVDENIRKLTGRDPNELRPGQARRLTIPGPGGGRGRGIGL
LRRGLSDSGGGPPAKQRDIEGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSVVAT
SKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESSVSTEKQKRRLEIEKKLEV
QAEQERKKIENERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNAKLIKYIRTKTKP
SIFYIPGKMCSATQKLLEESQKKMNVMLQERREAFAEHLNKMEARPRRQLLRDKVQGDPR
GEWPKKEEQEEGKPSGQEVEVTGNQNDAEMEEGGEGDEKEVSVGQSGLEQEQEKPVEMNA
GCKDDEEKGAEAAEIREAEEQGREEENREPTEGQVGEKDEQVEEEMVPVGVEEGDERKED
EGENEAEGQKETQAVSPWKPPLELVSPEDGSESCSATSRPAEFMVVEPVGMGTAATATAP
QAHSPQHEAGLEAQREEQGWGPMPQTQVEGLVKVPSAQGDGRGRGAARDRKRSRSSSSST
SSGSSSSSSSGSSSSSGSSSSSEGSSSSSSSSSSSSRSRSRSHTRDRKHRGRPSDRDRKR
GGGMAADRSHKLSKGSGRDAKGAKDKSSKSDRRRSFSEGNRMGKRPSHSERARKSDRKDK
RR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgctgtacgaactttgcaggaccagctggaaaaggcgaaagaaagcttaaaa
aatgtggacgaaaacattcggaaattgacgggcagagatcccaacgagctcagacctggt
caagctagaaggctaaccatcccaggcccaggtggaggtagggggcgaggaattggttta
ttgaggcgtggactctcggacagtggaggaggacccccagctaagcagagggatattgaa
ggggcactcttgaggctggctggcgatcaacgagcgaggagagattcacgccatgacagc
gacgctgaggacgatgatgatgtgaaaaaaccagcgttgcagtcatccgttgttgctacc
tccaaagaacgaacacgtcgagaccttatccaagaccagaccatggatgagaaaggaaaa
caaaggaatcgacgtatgtttggcctgttgatgggaactctgcagaaatttaagcaggaa
tcatcagtgtccacagagaagcaaaaaagacgtttagaaattgaaaaaaagctggaagta
caagctgaacaagaacgtaaaaagatagaaaatgagagaagagagctgtttgaggaaagg
cgtgcaaagcagacagagctgagacttcttgaacagaaagtggaacttgctcagttgcaa
gaagagtggaatgtgcacaatgctaagttaataaagtatatccgtacaaaaaccaagcct
tcaattttctatattcctggcaagatgtgctcagccactcagaagctcttagaggagtct
cagaaaaaaatgaatgtgatgttgcaggagaggcgtgaggcgtttgccgagcacctgaac
aagatggaggctcggcccaggcgccaactactgagggacaaagtccagggggatcctcgc
ggcgaatggccgaagaaagaagagcaagaggagggtaagccatctgggcaggaggtggag
gtgacaggtaaccagaacgatgcagagatggaggagggtggggagggggatgaaaaagag
gtgagtgtaggacagagtggtctggagcaagagcaggagaagccagtggagatgaatgca
ggctgcaaggacgacgaggagaagggtgcagaggcagcagaaattagagaggcggaggaa
cagggaagagaagaagaaaacagggagcccacagagggacaggtaggggaaaaggatgag
caggtggaggaggagatggtgcctgtaggtgtggaggaaggtgatgagaggaaggaagat
gagggtgagaatgaagcagaaggacagaaggaaacccaagcagtctctccctggaagccc
cctcttgagttagtgagcccagaggatgggtcagagtcctgctctgctaccagccggcct
gcggaattcatggtggtggagcctgtcggcatgggaactgcagccactgcaacggctcca
caggcccactcgccacagcatgaggcaggattggaggcccagagggaggagcaagggtgg
ggcccaatgcctcagacccaggtggagggtctagttaaggtgcccagtgctcagggagac
ggcagggggaggggggcagccagggataggaagagaagccggagcagcagcagttcgacc
tccagcggctcgtcgagctccagctccagcggctcgtccagctccagcggctcgtccagc
tccagtgagggcagcagctcttccagcagcagcagctcctccagcagccggagcagaagc
cgcagccacaccagggacaggaagcacaggggccggccctctgacagggacaggaagaga
ggagggggcatggcagctgataggagccacaagttgtccaagggcagcggtcgtgatgcc
aagggggccaaggacaagagctccaagtcagacaggaggaggtcgttttcagaaggcaac
cggatggggaaacggccctctcacagcgaaagggcccgcaagtcagacaggaaggacaag
aggcgttag
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