Scleropages formosus (Asian bonytongue): 108920057
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Entry
108920057 CDS
T04919
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108920057
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108920057
09142 Cell motility
04820 Cytoskeleton in muscle cells
108920057
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108920057
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108920057
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108920057
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108920057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108920057
NCBI-ProteinID:
XP_018584038
LinkDB
All DBs
Position
14:12259118..12301722
Genome browser
AA seq
1650 aa
AA seq
DB search
MQVRPWTKVHRLWFALLLLTIVTFSPSEVEAGGKKFSGVCGGRDCSGGCKCYPEKGARGQ
PGLTGPQGPRGLPGELGDIGLQGPKGQKGDQGPDGITGPKGAIGMTGVPGFSGADGIPGH
PGQAGPRGKPGADGYNGTQGDTGSPGPPGVPGYHGYPGGHGVKGQKGDTLELSVFMERFR
GDSGDPGLQGIIGPQGSPGLMGPRGVAGPQGPPGPPGPPGPKGLKIRILKGVKGERGDIG
EPGPIFQPSALSGPSGNKGEKGSKGETGDLVMTVHTNGRGEPGVMGFQGQRGDSGYPGIP
GDRGDAGDPGPQGKPGLKGEQGEAGEVLSLGGPVKVGPAGPAGELGPEGERGEQGEKGPR
GQPGLPAQATEQLVHLTGQFGPKGLKGAKGPDGDPGLPAMMPGPPGLDGLPGTQGPPGPT
GSWENEFRGPEGERGRPGFSGLKGHKGEPGLCQCDIVHSAAGPPGPAGNPGVRGMPGEWG
QKGDIGQPGLEGLTGVLGSSGPKGLPGLKGSKGKPRDAIEKGAPGDPGDPGEVGEPGERG
LSGPSGVSGSPGPQGPVGSGPVGSPGDKGLPGRPGPRGEVGPIGTPGSVLGIVKGEPGLP
GDPGFDGSSGTMGPPGVPGESNAVPGPPGEPGPVGMDGFPGLTGLKGFSGLPGEEGLKGE
RGEQGQEASAGPPGFVGSRGDKGQQGAKGSKGTIGPPGQPGQRGEVGLKGHHGEVTGIPA
AQPGEPGPPGSQGNQGFTGDPGKQGDPGRRGMPGVRGPKGEIGSAGLQGEEGEPGLPGRY
GFPGFSGQSGMPGPPGPPGEPGFSGDRGDGGDPGPPGPSIIKGERGERGDLGLNGSVGAQ
GDPGEAGLLGFRGISGLKGAKGSPGFSGFQGMIGLKGIQGFTGLQGETGSSGAPGEKGSI
GQPGEKGDRGLIGPPGKEPDIPRWVIVMMKGVKGDHGIPGEHGFTGPRGQKGFPGVPGGP
GLHGLPGSPSYEKGLPGSPGSPGLPGSKGMPGQTGAPGIEGFPGMPGPRGDKGTSGAFGP
TGDPGLDGPKGEEGAVVDLPGSTGLRGESGLPGLPGMKGLFGQPGDRGSPGFDGIQGPKG
VQGQPGLEGLTGPLGKQGYSGTQGPKGHPGTLGMPGEPGASGIPGQRGFPGLKGIFGLDG
LKGQKGIQGFTGLDNWGLPGETGSKGEKGEPGTHSTDVGLPGSLGFKGTEGDPGDQGESG
PPGNQGPPGPLGTIGQKGPVGSQGFPGPKGPKGSTGVQGIAGEYSQFGDKGERGLSGAFG
HRGVKGLQGDQGQLGPPGQMGPTGMKGIKGEPGLMGTPGRPGVQGERGLVGPKGNTGLPG
LPGEPGSRGVAPILEKQIGERGLPGVRGIRGPEGVRGESGPQGPPGEPGFIGPQGQKGIS
GVSGTPGKPGKRGDIGLTGHRGLQGVKGSPGRPGTPGIPGMPGRSISVGYLLVRHSQSED
TPMCPLGMAKLWEGYSLLYFEGQEKAHNQDLGLAGSCLLRFNTMPFLYCHPGEICHYASR
NDKSYWLSTLASIPMMPVEGVDIRPYVSRCSVCEAPSVAVAVHSQDSTIPKCPQGWRSLW
IGYSFLMHTASGEGGGQSLMSPGSCLEHFRTTPFIECSGARGTCHYFSSKQSFWLASIAQ
TFQSSSATKTLKAGQILSQISRCQVCMKNL
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgcgtccgtggaccaaagtgcatcgattgtggtttgcgcttctacttctgacc
atcgtcactttttccccgtctgaagtagaagcgggaggcaaaaagttcagtggagtctgt
ggaggaagagactgcagcggaggatgcaaatgttaccccgagaagggcgctcggggtcag
ccaggtcttactggtcctcagggacctcgtgggctcccaggtgaactgggtgacattggc
ctccaggggcccaaaggacagaagggggaccaggggccagatggcatcaccggacccaaa
ggagctattggaatgacaggtgttcctgggttttcaggagctgatggtattccaggccac
ccaggacaggcaggacctcgagggaaaccaggtgctgatggctacaatggaacacaagga
gacacggggtcaccaggaccaccaggagtgcctggctatcatggctacccgggtggtcat
ggtgtcaagggacagaaaggtgacactctggagctcagcgtgtttatggagcgatttcga
ggtgattcgggagatcctggactccaaggaattattggcccccagggcagcccaggttta
atgggccccaggggtgttgcaggaccgcaggggccccctggacctcccggccccccagga
ccaaaaggcctaaaaatcagaattctgaagggagtgaaaggagagaggggagacattggc
gagccaggcccaatcttccagccctcagctctctccgggccatctggcaataaaggtgaa
aaggggtcaaaaggtgaaactggagatttggtaatgactgttcatactaatggaagaggg
gagcctggggttatggggtttcaagggcaacgaggagactcgggctaccccggcatacca
ggagacaggggggatgcaggagatcctggaccacaaggaaaacctggactcaaaggtgaa
caaggagaggcaggagaagtattatcccttggaggtccagtaaaagtgggccctgctggt
cctgctggagagcttggtcccgaaggagagaggggagaacaaggagagaaaggtccacga
gggcaacctggacttccagctcaggccactgaacagcttgtgcaccttactgggcagttt
ggtccaaagggtcttaaaggggccaaaggtcctgatggtgaccctgggttacctgctatg
atgcctggtccccctggtttagatggattacctggaactcaaggcccaccaggccccacg
ggatcatgggaaaatgagtttagaggcccagaaggtgaaagaggaagaccaggcttttct
ggactgaaaggacacaaaggtgaaccagggctgtgccagtgtgacatcgttcactcagct
gcaggacccccaggccctgctggcaatccaggtgtccgtggaatgccaggggaatggggc
cagaaaggcgacataggccagcctgggctggaagggctcactggagtgctgggatcctca
ggcccaaaaggccttcctgggcttaaaggaagtaaagggaaaccaagagatgccattgaa
aaaggagcacctggagacccaggtgacccaggtgaagtgggtgagccaggagaaagaggt
ctgtcagggccaagtggagtctctggatcacctggaccacagggtcctgtgggttctggg
cctgtgggatccccaggagataaaggtcttccaggtcgtccgggtcctcgtggtgaagtc
ggccccataggtacaccaggttctgtattgggcattgtgaagggagagcctggccttcct
ggtgaccctggatttgacggatcttcaggcactatgggaccaccaggtgtccctggagag
tcaaatgcagtgcctggacctcctggtgaacctggacctgttggcatggatggtttccct
ggtttgacaggtctcaaagggttctctggattgcctggggaggaaggactcaaaggtgaa
agaggggaacaaggccaagaagcctctgctggaccaccagggtttgtgggatctcgggga
gacaaaggtcagcaaggtgccaaaggaagcaagggtacaataggtccaccaggccagcca
ggtcagcggggggaagttgggttgaagggccatcatggcgaagttactgggataccagct
gcacagcctggagaacctgggcctcctggttcccaagggaatcaaggttttacaggagac
cctggcaagcagggagacccagggaggagaggaatgccaggtgtccgtgggccaaaaggt
gaaataggttctgcgggcttgcaaggggaagaaggggaacccgggctaccaggcagatat
ggatttccagggttttctggacagtcaggcatgccaggccccccaggcccacctggtgaa
ccaggtttctctggagacagaggggatggtggcgacccaggaccaccagggccctcaata
attaaaggggaacgaggtgaacgtggtgacctgggcctaaacggaagtgtgggtgcacag
ggagatccaggagaggctggtctattaggctttcgtggaatatctggactaaaaggtgct
aaaggctcaccaggcttctcaggatttcaaggtatgattggccttaagggcatacaaggc
tttacaggactgcaaggggagactggatcttctggggctcctggcgagaaaggtagcata
ggccagcctggtgaaaaaggtgaccgaggtctaattgggcctcctggtaaggaaccagat
attccacgatgggtgattgtaatgatgaagggggtcaagggtgatcatgggataccaggg
gagcatggctttacaggacccaggggccaaaaaggcttccccggtgtgccaggaggcccg
ggacttcatggcctgcccggatcacccagctatgagaaaggccttcctgggagcccgggg
tcaccaggactgcccggaagcaaaggaatgccgggccaaacaggagcaccaggaattgag
ggatttcctgggatgcctggtcccaggggagacaagggcacatctggagcctttggtcct
acaggggatccaggcctggacggaccaaaaggtgaagaaggagctgtagtggacttgcct
ggctcaacaggattgaggggtgaaagtgggttacctggactgcctggcatgaaaggatta
ttcggccagcctggagacaggggcagccctggttttgatggcattcagggtccaaaaggg
gttcagggtcagcctggtctagaagggctaacagggccactgggaaagcagggatactca
gggactcagggccccaagggtcaccctgggactctaggaatgcccggagaacctggcgca
tcaggaattcctgggcagagaggctttcctggtttaaagggtatttttgggctggatggt
cttaaagggcaaaagggtattcaaggattcacaggtttggataactggggactgccaggt
gagacaggctctaaaggtgaaaaaggagagccagggacccacagtacagatgtaggattg
ccagggtctttgggcttcaagggcacagaaggagatccaggtgatcaaggtgaatctggg
ccccctggaaaccaggggcctccagggcctcttgggaccattggccaaaaaggtcctgtg
ggaagccaaggttttccgggtccaaaaggaccaaaaggttccactggggttcaaggtatc
gctggtgaatattcccaatttggtgataaaggagagagaggcttgtctggagcatttggg
cacaggggtgtaaaaggcctacagggagatcaaggacagctaggccccccaggacaaatg
ggaccaacagggatgaaaggaataaaaggagaaccagggctgatgggaactcctggaagg
cctggtgtccaaggagagagaggactggttgggcctaaggggaacacaggactacctggt
ttacctggagaacctggctctcggggtgtggcacccatcctagaaaaacagattggagag
aggggccttcctggggtccgtggaatcagaggtcctgaaggagtaaggggagaaagcggt
cctcagggaccacctggagagccaggatttataggcccacaggggcaaaagggaatctca
ggagtgagtggtacaccagggaaaccagggaagcgtggagacattggtctcactggacat
cgtggtctccagggcgtgaaaggaagtccaggacgccccggaacccctggtatcccgggc
atgccgggccgcagcatcagtgtgggctacctgctggtgaggcacagtcagtctgaggac
acacccatgtgccctttgggcatggccaaactgtgggaggggtacagcttgttgtacttt
gagggccaggaaaaagcccataaccaggatctgggtctggctggatcatgccttctgcgc
tttaacaccatgcccttcttgtattgccacccgggtgaaatttgccattacgccagccgg
aatgataaatcctactggctgtccacactggcctccattcccatgatgcctgtggaaggg
gtggatatcaggccctatgtcagccgctgctcagtgtgtgaggctccatccgtggccgtt
gccgtccacagccaggacagtaccattccaaagtgtccccagggctggagaagcctctgg
atcggatactccttcctcatgcacacagcatcaggcgaaggtggaggtcagtccctcatg
tcacccggttcctgcctggagcacttccgcacgacacccttcatcgagtgcagcggcgcc
aggggcacctgccactacttctccagcaagcagagtttctggctagcatccatcgcgcag
actttccagagctcgtcagccaccaagactctcaaagctggccagatcctgtctcagatc
agccgctgtcaggtgtgcatgaagaacctgtga
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