Scleropages formosus (Asian bonytongue): 108937809
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Entry
108937809 CDS
T04919
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03030
DNA replication
sfm03410
Base excision repair
sfm03420
Nucleotide excision repair
sfm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108937809 (lig1)
03410 Base excision repair
108937809 (lig1)
03420 Nucleotide excision repair
108937809 (lig1)
03430 Mismatch repair
108937809 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfm03032
]
108937809 (lig1)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108937809 (lig1)
Enzymes [BR:
sfm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108937809 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
108937809 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
108937809 (lig1)
DNA replication proteins [BR:
sfm03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
108937809 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
108937809 (lig1)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
108937809 (lig1)
NER (nucleotide excision repair)
Other NER factors
108937809 (lig1)
MMR (mismatch excision repair)
Other MMR factors
108937809 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
108937809
NCBI-ProteinID:
XP_018613483
UniProt:
A0A8C9RXV9
LinkDB
All DBs
Position
1:16070309..16080322
Genome browser
AA seq
965 aa
AA seq
DB search
MQRSIASFFQPMKEKEKEGRKTDGQNKERTELVKSPLKPQNGLQECDSPVKKVTKRCRQI
IDSDDDEQPVVKEQAANQACSLTPGKQTVGKTPAFASPIAAPGSSPVPSTPVTPASSGTP
DSPATSVSPGTPSSISPSGILKRKTARKRFPKRKLDSGCTSEEGTEPEGNQAKRSRTEQV
PEVSDHETEAAEEDQKDIADPNESMEVQEHKEEQVVGTMEGKVKEKEKNTEKVEEDQSPP
KVTKQEGKADSEKKKPISSFFAPRKAAAKLEKSEETVNGEGEKQLGATKEKAAGNEKGTV
RSGKAGILSQTEYDPSRPNYHPVEHACWSQGQRVPYLAVARTFEKIEEEMGRLKNIETLS
NLLRSVVALSPDDLLCCIYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEA
QEKGDLGLVAESSRSNQRMMFTPANLTAAGVFSKLKDIANMSGNASMNKKIDIIKGLFVA
CRHSEARYIVRSLAGKLRIGLAEQSVLAALAQAVCLTPPGQEFPLQVIDAGKSMSSETRR
TWLEKKTLILKQTYCEMPSYDVIVPVLLKEGIDELPQHCKLTPGVPLRPMLAHPTKGVSE
VMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTTKYPDIITRVPQVKKASV
RSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASDIKVQVCVYAFDLLYLNGESLVRE
PLSWRRALLRESFEEREGEFMFARSLDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATY
EIAKRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRAGSYGGYLLACYDEENEEYQSV
CKIGTGFKDEDLEQHFNFFKEHVLQKLRPYYRVDQSAEPDVWLEAVQVWEVKCADLSLSP
VHKAAMGLVEPDKGISLRFPRFLRIRDDKKPEDSTTGAQIADLYRKQQQIQNQGAADRAD
PEDYY
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcatcgcgtcgttctttcaacccatgaaagaaaaggagaaggagggacga
aaaactgatggacagaataaagagaggacagaactagttaaatcgccactaaaacctcaa
aatgggctgcaggaatgtgactcgcctgtaaagaaagtcacaaagcgctgccggcaaatc
atagacagcgatgatgatgaacagcctgttgtgaaggagcaggcagccaatcaagcttgt
tctctcactcctggaaagcagacagtagggaagacacctgcatttgcatctcctatagct
gctccaggttcttcacctgttccctctacaccagttactccagcttcctcaggtactcca
gatagtcctgccacctcagtatccccaggcaccccgtcctccatctccccttcaggaatc
ctgaagcgcaagactgccagaaagcgttttccgaaaagaaagctggacagtggatgtacc
agtgaggagggaacagaaccggaaggaaaccaagcaaagaggtcccggacagagcaagtt
ccagaagtgtcagatcatgagactgaagctgcagaagaggaccagaaagatattgctgat
ccaaacgaaagcatggaagtacaggagcataaggaggagcaggtggttggaacaatggag
ggaaaggttaaagagaaagaaaaaaatactgaaaaggttgaagaggatcagagtcctcca
aaagtgacaaagcaggaaggcaaagcagactctgagaagaaaaagcccataagcagtttc
tttgcaccaaggaaagcagcagcaaaactggaaaaatcagaggagactgtgaatggcgaa
ggagagaaacagctgggtgcaacaaaagagaaggcagcggggaatgagaaagggacagtg
agaagtggaaaggctggaattttgagccagactgagtatgatccatccaggcccaactac
catcctgtggagcatgcctgctggagtcagggtcaaagggtgccctatctggctgttgct
cgtacgtttgagaaaatagaggaggaaatgggcaggttgaagaacatagagaccctgtca
aacctgctgcgttccgtggtggcgctctctccagatgacctgctctgttgcatatacctg
tgtctgaaccagttgggtcctgcttacttgggaatggagctcggagttggggaaactgtg
ctgatgaaggctgttgcccaggcaaccgggcgacagttggacaaaatcaaggcagaggct
caggagaaaggggacctgggattggtggccgagagctcacgtagcaaccagagaatgatg
tttaccccggccaatctgacagcggctggtgtgttcagcaagctcaaggacatagccaac
atgagtggaaatgcttctatgaataaaaaaattgacatcatcaaaggcctgtttgtggcc
tgcagacactctgaagcccgatacatcgtgaggtctctggctgggaagctgcggattggt
ctggcagagcagagcgtactggcggccttggcgcaagcagtgtgcctgacccctccaggg
caagagtttcctctgcaggtgattgatgctggaaagagcatgagctcagagacccgcagg
acctggcttgagaaaaagaccctcattctaaagcagacatactgtgagatgccgagctat
gatgtcattgttccagtcctgctgaaggagggaattgatgaactacctcagcactgcaag
ctcacgccaggagtccccctgaggcccatgctggctcaccccactaagggtgtgtctgag
gtgatgaagcggtttgacgaagctgcgtttacctgcgaatacaagtatgatggagagaga
gcacagatccatattctggagaatggggaggttcgcatcttcagccgcaatcaggaggac
aacacgactaaatatccagacatcatcactcgtgtaccacaagtaaaaaaggcttctgtg
cgctcctgtgtgcttgactcggaggcagtggcctgggacagggagaagaagcagatccag
ccctttcaggtgctaacgacacggaagagaaaggatgtggatgcgtctgacatcaaggtg
caggtctgtgtctatgcctttgacctgctttacctgaatggagagtctctggtcagagag
cccctctcctggcgtagggccttgttgagagagagctttgaggagcgtgagggggagttt
atgtttgcccgctcgcttgactcagacaacacggacactattgccgagttccttgagcag
tctgttcgagactcttgtgagggtcttatggtgaagaccttagagaaggatgccacctat
gaaatcgctaagcgctcacacaactggctcaagctgaaaaaggactacctggatggggta
ggggacaccgtggacctgtgtgtgattggtgcctacctgggcaagggcaagagggcgggg
tcatatgggggttacctgttagcctgctacgacgaggagaacgaggagtaccagtctgtg
tgcaagattggaacaggctttaaggatgaggatttggagcagcattttaatttcttcaag
gaacatgtgttgcagaagctccgtccgtactaccgcgttgaccaatcagctgagcctgac
gtgtggttggaggcggtacaagtgtgggaagtgaagtgtgctgacctgtcactctctcca
gttcacaaagctgccatgggattggtggaaccagacaagggcatctccctacggttccct
cgtttcctcagaatcagagatgacaagaaaccagaagattccacgacaggagcacagatt
gcagatctgtaccggaaacagcagcagatccagaaccagggagctgccgatagagccgac
ccagaggactactactga
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