KEGG   Scleropages formosus (Asian bonytongue): 108937809Help
Entry
108937809         CDS       T04919                                 

Gene name
lig1
Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sfm  Scleropages formosus (Asian bonytongue)
Pathway
sfm03030  DNA replication
sfm03410  Base excision repair
sfm03420  Nucleotide excision repair
sfm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sfm00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    108937809 (lig1)
   03410 Base excision repair
    108937809 (lig1)
   03420 Nucleotide excision repair
    108937809 (lig1)
   03430 Mismatch repair
    108937809 (lig1)
Enzymes [BR:sfm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108937809 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     108937809 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108937809 (lig1)
DNA replication proteins [BR:sfm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    108937809 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     108937809 (lig1)
DNA repair and recombination proteins [BR:sfm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108937809 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     108937809 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     108937809 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 108937809
NCBI-ProteinID: XP_018613483
UniProt: A0A1W5AJ56
LinkDB All DBs
Position
Unknown
AA seq 965 aa AA seqDB search
MQRSIASFFQPMKEKEKEGRKTDGQNKERTELVKSPLKPQNGLQECDSPVKKVTKRCRQI
IDSDDDEQPVVKEQAANQACSLTPGKQTVGKTPAFASPIAAPGSSPVPSTPVTPASSGTP
DSPATSVSPGTPSSISPSGILKRKTARKRFPKRKLDSGCTSEEGTEPEGNQAKRSRTEQV
PEVSDHETEAAEEDQKDIADPNESMEVQEHKEEQVVGTMEGKVKEKEKNTEKVEEDQSPP
KVTKQEGKADSEKKKPISSFFAPRKAAAKLEKSEETVNGEGEKQLGATKEKAAGNEKGTV
RSGKAGILSQTEYDPSRPNYHPVEHACWSQGQRVPYLAVARTFEKIEEEMGRLKNIETLS
NLLRSVVALSPDDLLCCIYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEA
QEKGDLGLVAESSRSNQRMMFTPANLTAAGVFSKLKDIANMSGNASMNKKIDIIKGLFVA
CRHSEARYIVRSLAGKLRIGLAEQSVLAALAQAVCLTPPGQEFPLQVIDAGKSMSSETRR
TWLEKKTLILKQTYCEMPSYDVIVPVLLKEGIDELPQHCKLTPGVPLRPMLAHPTKGVSE
VMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTTKYPDIITRVPQVKKASV
RSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASDIKVQVCVYAFDLLYLNGESLVRE
PLSWRRALLRESFEEREGEFMFARSLDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATY
EIAKRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRAGSYGGYLLACYDEENEEYQSV
CKIGTGFKDEDLEQHFNFFKEHVLQKLRPYYRVDQSAEPDVWLEAVQVWEVKCADLSLSP
VHKAAMGLVEPDKGISLRFPRFLRIRDDKKPEDSTTGAQIADLYRKQQQIQNQGAADRAD
PEDYY
NT seq 2898 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgcagcatcgcgtcgttctttcaacccatgaaagaaaaggagaaggagggacga
aaaactgatggacagaataaagagaggacagaactagttaaatcgccactaaaacctcaa
aatgggctgcaggaatgtgactcgcctgtaaagaaagtcacaaagcgctgccggcaaatc
atagacagcgatgatgatgaacagcctgttgtgaaggagcaggcagccaatcaagcttgt
tctctcactcctggaaagcagacagtcgggaagacacctgcatttgcatctcctatagct
gctccaggttcttcacctgttccctctacaccagttactccagcttcctcaggtactcca
gatagtcctgccacctcagtatccccaggcaccccgtcctccatctccccttcaggaatc
ctgaagcgcaagactgccagaaagcgttttccgaaaagaaagctggacagtggatgtacc
agtgaggagggaacagaaccggaaggaaaccaagcaaagaggtcccggacagagcaagtt
ccagaagtgtcagatcatgagactgaagctgcagaagaggaccagaaagatattgctgat
ccaaacgaaagcatggaagtacaggagcataaggaggagcaggtggttggaacaatggag
ggaaaggttaaagagaaagaaaaaaatactgaaaaggttgaagaggatcagagtcctcca
aaagtgacaaagcaggaaggcaaagcagactctgagaagaaaaagcccataagcagtttc
tttgcaccaaggaaagcagcagcaaaactggaaaaatcagaggagactgtgaatggcgaa
ggagagaaacagctgggtgcaacaaaagagaaggcagcggggaatgagaaagggacagtg
agaagtggaaaggctggaattttgagccagactgagtatgatccatccaggcccaactac
catcctgtggagcatgcctgctggagtcagggtcaaagggtgccctatctggctgttgct
cgtacgtttgagaaaatagaggaggaaatgggcaggttgaagaacatagagaccctgtca
aacctgctgcgttccgtggtggcgctctctccagatgacctgctctgttgcatatacctg
tgtctgaaccagttgggtcctgcttacttgggaatggagctcggagttggggaaactgtg
ctgatgaaggctgttgcccaggcaaccgggcgacagttggacaaaatcaaggcagaggct
caggagaaaggggacctgggattggtggccgagagctcacgtagcaaccagagaatgatg
tttaccccggccaatctgacagcggctggtgtgttcagcaagctcaaggacatagccaac
atgagtggaaatgcttctatgaataaaaaaattgacatcatcaaaggcctgtttgtggcc
tgcagacactctgaagcccgatacatcgtgaggtctctggctgggaagctgcggattggt
ctggcagagcagagcgtactggcggccttggcgcaagcagtgtgcctgacccctccaggg
caagagtttcctctgcaggtgattgatgctggaaagagcatgagctcagagacccgcagg
acctggcttgagaaaaagaccctcattctaaagcagacatactgcgagatgccgagctat
gatgtcattgttccagtcctgctgaaggagggaattgatgaactacctcagcactgcaag
ctcacgccaggagtccccctgaggcccatgctggctcaccccactaagggtgtgtctgag
gtgatgaagcggtttgacgaagctgcgtttacctgcgaatacaagtatgatggagagaga
gcacagatccatattctggagaatggggaggttcgcatcttcagccgcaatcaggaggac
aacacgactaaatatccagacatcatcactcgtgtaccacaagtaaaaaaggcttctgtg
cgctcctgtgtgcttgactcggaggcagtggcctgggacagggagaagaagcagatccag
ccctttcaggtgctaacgacacggaagagaaaggatgtggatgcgtctgacatcaaggtg
caggtctgtgtctatgcctttgacctgctttacctgaatggagagtctctggtcagagag
cccctctcctggcgtagggccttgttgagagagagctttgaggagcgtgagggggagttt
atgtttgcccgctcgcttgactcagacaacacggacactattgccgagttccttgagcag
tctgttcgagactcttgtgagggtcttatggtgaagaccttagagaaggatgccacctat
gaaatcgctaagcgctcacacaactggctcaagctgaaaaaggactacctggatggggta
ggggacaccgtggacctgtgtgtgattggtgcctacctgggcaagggcaagagggcgggg
tcatatgggggttacctgttagcctgctacgacgaggagaacgaggagtaccagtctgtg
tgcaagattggaacaggctttaaggatgaggatttggagcagcattttaatttcttcaag
gaacatgtgttgcagaagctccgtccgtactaccgcgttgaccaatcagctgagcctgac
gtgtggttggaggcggtacaagtgtgggaagtgaagtgtgctgacctgtcactctctcca
gttcacaaagctgccatgggattggtggaaccagacaagggcatctccctacggttccct
cgtttcctcagaatcagagatgacaagaaaccagaagattccacgacaggagcacagatt
gcagatctgtaccggaaacagcagcagatccagaaccagggagctgccgatagagccgac
ccagaggactactactga

DBGET integrated database retrieval system