Shigella flexneri NCTC1 (serotype 2a): NCTC1_03887
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Entry
NCTC1_03887 CDS
T03751
Symbol
gadB_3
Name
(GenBank) glutamate decarboxylase GadB,Glutamate decarboxylase alpha,L-tyrosine decarboxylase,glutamate decarboxylase,Pyridoxal-dependent decarboxylase conserved domain
KO
K01580
glutamate decarboxylase [EC:
4.1.1.15
]
Organism
sft
Shigella flexneri NCTC1 (serotype 2a)
Pathway
sft00250
Alanine, aspartate and glutamate metabolism
sft00410
beta-Alanine metabolism
sft00430
Taurine and hypotaurine metabolism
sft00650
Butanoate metabolism
sft01100
Metabolic pathways
sft01110
Biosynthesis of secondary metabolites
sft01120
Microbial metabolism in diverse environments
sft02024
Quorum sensing
Module
sft_M00027
GABA (gamma-Aminobutyrate) shunt
Brite
KEGG Orthology (KO) [BR:
sft00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
NCTC1_03887 (gadB_3)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
NCTC1_03887 (gadB_3)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
NCTC1_03887 (gadB_3)
00430 Taurine and hypotaurine metabolism
NCTC1_03887 (gadB_3)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
NCTC1_03887 (gadB_3)
Enzymes [BR:
sft01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.15 glutamate decarboxylase
NCTC1_03887 (gadB_3)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyridoxal_deC
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
CDX08992
UniProt:
A0A8B6WVC0
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All DBs
Position
1:3607921..3609321
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AA seq
466 aa
AA seq
DB search
MDQKLLTDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNL
ATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVG
TNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREI
PMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDM
HIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELV
FNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQ
GPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVV
MRIMCRRGFEMDFAELLLEDYKASLKYLSDHPKLQGIAQQNSFKHT
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggaccagaagctgttaacggatttccgctcagaactactcgattcacgttttggcgca
aaggccatttctactatcgcggagtcaaaacgatttccgctgcacgaaatgcgcgatgat
gtcgcattccagattatcaatgatgaattatatcttgatggcaacgctcgtcagaaccta
gccactttctgccagacctgggacgacgaaaacgtccataaattgatggatttgtcgatc
aataaaaactggatcgacaaagaagaatatccgcaatccgcagccatcgacctgcgttgc
gtaaatatggttgccgatctgtggcatgcgcctgcgccgaaaaatggtcaggccgttggc
accaacaccattggttcttccgaggcctgtatgctcggcgggatggcgatgaaatggcgt
tggcgcaagcgtatggaagctgcaggcaaaccaacggataaaccaaacctagtgtgcggt
ccggtacaaatctgctggcataaattcgcccgctactgggatgtggagctgcgtgagatc
cctatgcgccccggtcagttgtttatggacccgaaacgcatgattgaagcctgtgacgaa
aacaccatcggcgtggtgccgactttcggcgtgacctacaccggtaactatgagttccca
caaccgctgcacgatgcgctggataaattccaggccgacaccggtatcgacatcgacatg
cacatcgacgctgccagcggtggcttcctggcaccgttcgtcgccccggatatcgtctgg
gacttccgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggct
ccgctgggctgcggctgggttatctggcgtgacgaagaagcgctgccgcaggaactggtg
ttcaacgttgactacctgggtggtcaaattggtacttttgccatcaacttctcccgcccg
gcgggtcaggtaattgcacagtactatgaattcctgcgcctcggtcgtgaaggctatacc
aaagtacagaacgcctcttaccaggttgccgcttatctggcggatgaaatcgccaaacag
gggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttc
aaactgaaagatggtgaagatccgggatacaccctgtacgacctctctgaacgtctgcgt
ctgcgcggctggcaggttccggccttcactctcggcggtgaagccaccgacatcgtggtg
atgcgcattatgtgtcgtcgcggcttcgaaatggactttgctgaactgttgctggaagac
tacaaagcctccctgaaatatctcagcgatcacccgaaactgcagggtattgcccagcag
aacagctttaaacacacctga
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