Streptomyces griseorubiginosus: DWG14_01709
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Entry
DWG14_01709 CDS
T06099
Symbol
ligD_2
Name
(GenBank) Multifunctional non-homologous end joining DNA repair protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sge
Streptomyces griseorubiginosus
Pathway
sge03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DWG14_01709 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sge03400
]
DWG14_01709 (ligD_2)
Enzymes [BR:
sge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DWG14_01709 (ligD_2)
DNA repair and recombination proteins [BR:
sge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DWG14_01709 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AYC37491
UniProt:
A0A385ZEW5
LinkDB
All DBs
Position
complement(1951732..1952661)
Genome browser
AA seq
309 aa
AA seq
DB search
MSSDDVRTVRAGKHTVEVHRPGKVLFPGGDGAKEYTKGDLVAYYRSVAPFMLPHLRGRPL
MLERHPDGLAGPRFMQKNTPDSYPEWIRRVEVTKEGGTVCHTVCDDTATLLYLADQASLT
LHRWLSRAGSVERPDRMVFDLDPAGDDFEAVREAARLLGELLDELRLPSALMTTGSRGLH
VIVPLDGRHDFDEVREFAKDVADALVAGHPEQLTTAARKKDRGDRLYLDVQRNGYAQTAV
APFTVRAKPGAPVATPMSWAQLDDPGLDARRWTVADAVEQARTDPWAGILARGRALGPAR
RRLNALMSS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcgacgacgtacggaccgtacgcgcggggaagcacaccgtcgaggtgcaccgg
ccgggcaaggtgctcttccccggcggcgacggagccaaggagtacaccaagggcgacctc
gtcgcgtactaccggtccgtggcgccgttcatgctgccgcacctgcgcggccgtccgctg
atgctggaacggcatccggacggcctcgcgggcccccggttcatgcagaagaacaccccg
gactcgtatccggaatggatccgccgggtcgaggtgacgaaggagggcggcaccgtctgc
cacaccgtctgtgacgacaccgccaccctgctgtacctcgccgaccaggcctccctcacc
ctgcaccgctggctgtcccgggccggcagcgtggagcggcccgaccggatggtcttcgac
ctcgacccggccggggacgacttcgaggcggtgcgcgaggcggcccggctgctcggggag
ctgctcgacgagctgcggctgccctccgcgctgatgaccaccggctcgcgcggactgcat
gtgatcgtgcccctcgacggccggcacgacttcgacgaggtgcgcgaattcgccaaggac
gtggccgacgccctggtcgccggccaccccgagcagctcaccaccgccgcccgcaagaag
gaccgcggcgaccgcctctacctggacgtccagcgcaacggctacgcgcagaccgccgtc
gcccccttcaccgtgcgggcgaaacccggagcacccgtggccacgccgatgagctgggcc
cagctcgacgatcccggactcgacgcccgccgctggaccgtcgccgacgccgtggagcag
gcccgtaccgatccctgggccgggattctggcgcggggacgggcgctcgggccggcccgg
cgcaggctgaacgcgttgatgtcgtcctga
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