Stenotrophomonas geniculata: RKE57_20985
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Entry
RKE57_20985 CDS
T09411
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RKE57_20985 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_20985 (recD)
Enzymes [BR:
sgen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RKE57_20985 (recD)
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RKE57_20985 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
Viral_helicase1
UvrD_C_2
AAA_11
Helicase_RecD
AAA_22
UvrD-helicase
SH3_13
UvrD_C
RecD_N
SLFN-g3_helicase
nSTAND3
Herpes_Helicase
AAA_28
T2SSE
Phageshock_PspD
ATPase
AAA_29
DEAD
NTPase_1
SRP54
Motif
Other DBs
NCBI-ProteinID:
WNF10492
LinkDB
All DBs
Position
complement(4576528..4578408)
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AA seq
626 aa
AA seq
DB search
MSLLKELHQKGQLRTLDHALATSLQRLRDDTPESVALAAALASLAVSQGHAAFDPAQPQR
LLEGVPEWPAAQDWLAQLRASPWVATPEQADAIAEDAPLVLENGLLYLRRYREYERQLAA
GLQRIGRHPLPAPDMTALAPLFAQLFPQALNSEDHQARAAGVTLRHPLALVTGGPGTGKT
TTIARLLLLLAAQARHAGQPLPEVALAAPTGRAAERMAESLRMAVQRLQEQGLDPTLCAA
LPSSGTTLHRLLGVIPDSPRFRHHADNPLAVDVVVVDEASMIDLPMMAKLVDAIASGTRL
ILLGDPDQLPSVEAGDVLSAILRASGDGIGTRADDAQALHGLLAPATLQPQAAPRAFAGR
RVQLQRGYRQSDALDLAPLAHAVREGDSSTALQLLRGGSLAGVHFHEGEADPLRGQREHL
LGHWRALAEAADPVSALQQAGRLRVLTALREGPQGARGLNSRIEQLLAGNTPGYFQGRLL
LVTENSYRHRLFNGDIGICLRDGSGAMVAWFPGDTVEQPRAFHPAALPTHESAFAMTVHK
AQGSEFDEVWLQLPRQDGRVLSRELVYTGLTRARQRLHVAGSAEVLQAALKRHASRLGGL
AWRLGAEAVAEAPARIEQPTVQGTLF
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgaaggaactgcaccagaagggccagctgcgcactcttgatcacgcgttg
gcgaccagcctgcagcggctgcgcgacgacacgcccgagagtgtggcgctggcggcggcg
ctggcctcgctggcggtatcgcagggccacgccgcgttcgatccggcacagccgcagcgg
ttgctggaaggcgtgcccgagtggcctgccgcgcaggactggctggcgcagctgcgcgca
tcgccctgggtagcgacgccggagcaggccgatgccatcgccgaggatgcgccgctggtg
ctggagaacggcctgctctacctgcgccgctatcgcgagtacgagcgtcagttggcggcc
gggctgcagcgcatcggccggcatccgctgccggcgccggacatgacggcgttggcgccg
ctgttcgcgcagctgttcccgcaggcattgaacagtgaagatcaccaggcacgcgcagcc
ggcgtgaccctgcgccatccgctggcactggtcaccggcggccccggcaccggcaagacc
accaccatcgcgcgcctgttgctgctgctggcggcgcaggcccggcatgccggccagccg
ctgcccgaggtggcgttggccgccccgaccggtcgcgctgccgagcgcatggccgagagc
ctgcgcatggccgtgcaacgcttgcaggaacagggactggatccgacgctgtgcgcggca
ctgcccagcagcggcaccaccctgcatcgactgctcggcgtgattccggattcgccgcgc
ttccgccaccacgccgacaatccgctggcggtggacgtggtggtggtcgacgaagcgtcg
atgatcgatctgccaatgatggccaagctggtcgatgcgattgccagcggcacccgcctg
atcctgctcggcgatcccgatcagttgccgtcggtcgaagccggtgatgtgctcagcgcg
atcctgcgcgccagcggcgatggcatcggcacccgcgccgacgacgcgcaggcactgcat
ggactgctggcgccggccaccttgcagccgcaggcggcaccacgcgcctttgctggccgc
cgcgtgcagctgcagcgcggttaccgtcagagtgatgcgctggacctggcgccgctggcg
catgccgtgcgcgaaggcgacagcagcaccgcattgcagctgctgcgtggcggttcactg
gctggcgtgcatttccatgaaggcgaagccgatccattgcgtggccaacgcgagcatctg
ctcggccactggcgcgcgctggccgaggccgctgatccggtaagtgccctgcagcaggcc
gggcgcctgcgcgtgctgaccgcattgcgcgaaggcccgcagggcgcgcgcgggctcaac
agccgtatcgaacagctgctggcaggcaacaccccgggctacttccagggccgcctgctg
ctggtcaccgagaacagctaccggcaccgcctgttcaacggcgatatcggcatctgcctg
cgcgatggcagcggcgcgatggtggcctggttccccggcgataccgtcgagcagccacgc
gccttccacccggccgcgttgcccacgcacgaaagcgcgttcgcgatgaccgtacacaag
gcacagggctcggagttcgacgaagtgtggttgcagctgccacgccaggacggccgcgtg
ctgtcgcgcgagctggtctacaccggcctgacccgtgcccgccaacgcctgcacgtagca
ggcagcgcagaggtgctgcaggccgcattgaaacgccacgccagtcgattgggtggcctg
gcctggcgcttgggtgcggaagcggtggccgaagcaccggcgcgcatcgaacagcctacc
gtgcagggcaccttgttctga
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