KEGG   Sinocyclocheilus grahami: 107557877Help
Entry
107557877         CDS       T04918                                 

Definition
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sgh  Sinocyclocheilus grahami
Pathway
sgh03030  DNA replication
sgh03410  Base excision repair
sgh03420  Nucleotide excision repair
sgh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sgh00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    107557877
   03410 Base excision repair
    107557877
   03420 Nucleotide excision repair
    107557877
   03430 Mismatch repair
    107557877
Enzymes [BR:sgh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107557877
    6.5.1.6  DNA ligase (ATP or NAD+)
     107557877
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107557877
DNA replication proteins [BR:sgh03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    107557877
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     107557877
DNA repair and recombination proteins [BR:sgh03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107557877
   NER (nucleotide excision repair)
    Other NER factors
     107557877
   MMR (mismatch exicision repair)
    Other MMR factors
     107557877
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 107557877
NCBI-ProteinID: XP_016096937
LinkDB All DBs
Position
Unknown
AA seq 995 aa AA seqDB search
MQRSIASFFQPMKSKEKSDGHVKAKAEPVKSPLKIQNGMQENDSPVKKVHKRSRAIIDSD
DEDQPIVKEQVPKQSEVQTAKPEKVRLEXSXTSTITTCQIAKAASTVSPKTPITPTTPVT
SSTSVAVVTPASSGTPGTPATPTSTSPSGIPKRKTARKHFPKRKLESRSDGEGTKEEENE
VDGAQESKRARVESSPGKTDNEMMEVEEKRADGKTAVEEQKGEDKAKSAVVEDDANNEMK
EKDKSDIKQEKKINGENGKKEKKGKQEKEDSSPKRVVKKEKNTEEGSAKKKPISSFFAPR
KAAVKLEKEEQVEGEKKKNGEISDAAEQKEKESEKGMDSAVQSQYDPSRAHYNPVDHACW
QKGQKVPYLAVARTFEKIEEDSGRLKNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPA
YQGLELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTA
GGVFNKLKEIANMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLS
ALSQAVCLSPPGQELPPAVLDAGKRMSAENKRVWMEEKALILKQTYCEMPNYDAIIPVLL
KEGIDELPNHCKLTPGVPLRPMLAHPTKGIGEVMKRFDEASFTCEYKYDGERAQIHILEN
GEVRIFSRNQEDNTSKYPDIISRIPQVKKENVRSCVLDSEAVAWDREKKQIQPFQVLTTR
KRKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRALLRESFEEKVGEFVFARALDA
DNTEAIAEFLEQSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCV
IGAYLGKGKRAGSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPR
PYYRVDQSAEPDVWLEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRYLRIRDD
KKPEDATTGSQIADLYKKQQQIQNQGEKQDLEDYY
NT seq 2988 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgaagcatagcatctttctttcagccaatgaaaagcaaggaaaagagtgatgga
catgtcaaagcaaaagccgaacctgtaaaaagtcccctcaaaattcagaatggcatgcag
gaaaatgattcacctgtgaagaaggttcataaacgcagtcgagcaatcatagacagcgat
gatgaagatcagccaatagtaaaagagcaggtgccaaaacagagtgaagttcaaacagca
aagccagagaaggtaagacttgagtaatcatgaacatcaaccataacaacatgtcagatt
gcaaaggctgcttccactgtatctccaaaaactcccataaccccaacgactcctgtcacg
tcgagtacctctgttgccgtggtaacccctgcttcctcaggtactccaggaactccagca
actccgacatcaacatcgccatcaggcattcccaaacgcaagactgcccgcaagcatttc
cccaagaggaagctggaaagcagaagtgatggagaggggacaaaagaggaggagaatgaa
gtcgatggagcgcaggaaagtaagagagcacgagtagagtcttcacctggaaaaacagac
aacgagatgatggaggtggaagagaagagagcagatgggaagactgctgtggaggaacag
aaaggggaggataaagcaaaatcagccgtagttgaggacgatgcaaacaatgagatgaaa
gaaaaggataaaagtgacataaaacaggagaaaaagataaatggagaaaatgggaagaaa
gaaaaaaaaggcaaacaagagaaggaagatagcagtcctaaacgagtggttaaaaaagaa
aaaaacacagaagagggatcggccaaaaagaaacctatcagcagcttttttgctcccaga
aaggcagctgtaaaactggaaaaagaggagcaagttgagggagaaaaaaagaagaatggg
gagatctctgacgctgctgaacagaaagagaaggaaagtgaaaaggggatggattctgca
gtccagagccagtatgatccctccagagcacattacaatcccgttgaccacgcttgctgg
cagaagggccaaaaagtgccatatttggctgtcgctcgcacctttgagaagattgaagag
gattcgggcaggctgaagaacattgaaacgctttccaactttctgcgatctgtaattcta
ctctctcccgatgacctgctatgctgtgtgtacctgtgtctgaatcagctcggccctgca
tatcagggtctggagctgggtgttggggagaccgtcctgatgaaagccgtcgctcaagca
actgggcgacaactggacaaaatcaaggcggaggctcaggagaaaggtgacctgggattg
gttgctgaaagttcccgtagcaaccagagaatgatgtttgcaccggccaatctgacagca
gggggcgttttcaacaaactgaaagagattgctaacatgagtggaaactctgcaatgaat
aagaagattgacattattaaaggcctctttgtggcgtgtcggttttctgaagctcgatac
attgtcaggtcactggctgggaagctgcggatcggattggctgagcagagcgttctctcg
gctctcagtcaggctgtatgtctgtcgcccccgggccaagagttaccaccggctgtgctg
gatgcagggaaaagaatgagtgcagaaaacaagagagtgtggatggaagagaaagcactg
atcctgaaacagacatactgtgagatgccaaattatgatgctatcattcctgtattgctg
aaggagggcatagatgaactgcccaatcactgcaagctcaccccaggtgttcccttgcgg
cccatgttggctcacccgacaaaagggatcggtgaggtaatgaaacgttttgatgaggca
tctttcacctgcgagtacaaatacgatggagagagagcccagatccatatacttgagaat
ggagaggtgcgcatctttagccgaaaccaagaggacaacacaagcaaataccctgatatt
atttcacgaatcccacaggtgaagaaagagaacgtacggtcctgtgttctggattcagag
gcggtggcctgggacagagaaaagaaacagatccagccatttcaggtcctcaccacgagg
aagaggaaggatgtggatgcatctgagatcaaggttcaggtgtgtgtgtacgcctttgat
ctgctgtacctcaacggagagtctctggtgcgagagcctctaagcaaacgcagggctctg
ttacgggagagttttgaggaaaaagtaggagaatttgtttttgctcgagctctggacgct
gacaacacggaggccatcgctgagtttctggagcagtctgtacgagattcttgtgagggc
ctaatggtgaagacattggaaaaacatgcaacttatgagattgccaaacgctcccacaac
tggctcaagctgaagaaggactatctggagggtgttggagacacagtggatctgtgcgtg
attggtgcttatctggggaaggggaagagagcaggaagctatggaggatttctactggcc
tgctacgatgaggagaatgaggagttccagtctgtctgcaagattggaacaggcttcaaa
gatgaagatctggagcaacattacaattttttaaaggagcacatcttacctaaaccacgc
ccatattaccgtgtggaccaatcagcagagccggatgtctggctggaggcggtacaagtg
tgggaggtgaaatgcgctgacctttcactgtctccagtctacaaggcagcaatgggattg
gtggacccagagaaaggcatttcactccgtttcccacggtacctcaggattagagatgac
aaaaaaccagaggatgccaccacagggtcacagattgcagatctctacaagaagcagcag
cagattcaaaaccagggcgaaaaacaagatctggaagactactattga

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