Sinocyclocheilus grahami (golden-line barbel): 107560224
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Entry
107560224 CDS
T04918
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107560224
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107560224
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107560224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
107560224
NCBI-ProteinID:
XP_016099826
LinkDB
All DBs
Position
Unknown
AA seq
858 aa
AA seq
DB search
MIGEPGKQGPPGSQGPPGRPGQDGTQGPPGEKGFTGKPGIAGAQGPVGMYGYPGATGLRG
QPGHIGERGEPGIRGPLGPPGQRGPPGLPGPAGERGPRGPQGRQGETGPAGLRGLPGPSG
LPGIEGAAGKPGPPGGQGPRGPQGKQGPIGLPGSPGTSGMVGQAGEKGGQGLPGPSGDPG
SVGLDGPQGHPGPVGFEGPTGPKGEHGSPGPSGKPGPNGYPGDQGPQGSQGMQGAPGPRG
KEGGIGPRGDIGDPGPKGQKGGPGHRGFSGRQGPSGFLGDRGERGLKGNKGYIGPQGQNG
LMGKSGPSGLMGLEGLIGLRGPPGANGLPGPKGETGSPGAPGHPGDQGNRGIAGQRGLQG
VMGKAGPQGAVGPRGPEGLLGPKGMPGQEGPKGEPGRQGPPGQMGPPGLPGNKGPSALLG
NEGHPGEMGADGPVGPPGPQGPSGKSGPQGRDGPKGQKGNYGLDGPPGKPGHAGKREKKG
KAGQRGLRGPRGEKGQQGAMGKTGPPGRPGQYGLPGIRGEKGESGEKGFEGEKGELGPLG
PPGGDGLKGEQGLTGEKGRQGLKGEQGDIGPTGQRGTPGLPGMPGLFGEKGLKGYPGLAG
PKGKRGPPGPPGLPGPPGLSLNLTLTQLKDLMYLSDKSNYPLLKTLLDSLQQDLRFFIDP
PDGTKEHPATTCLELMLSHPNLSSGMYYIDPNQGSPADALLVYCNFSAGGQTCLPPLQPQ
IPMKSWLKDTMPDSFTWLSAIDGGFQFDYMETGVVQMRFLRLNSKFVKQNITFSCQPNSH
QGSNERDIKFLADSRRQSFLGTLLDCEPVGSPHTGPRESVFQFETEDLELLPIRDLALFG
HSDTTEQFEFTVGQVCFS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgattggagaaccaggaaaacaaggccctccaggctcacagggcccacctggacgacca
ggccaagatggcactcaaggtcctcctggtgagaagggcttcactggaaaaccaggcatt
gcaggtgctcaagggcctgtaggcatgtatggttatccaggagccacaggccttcgtgga
cagccaggtcacattggagagaggggtgaacccggcatcaggggtcctctgggtccacca
gggcaaagaggtccacctggtttaccaggcccggctggtgagaggggcccacgtggacca
cagggtcgccaaggggaaacaggacctgctggcttgcgaggactgcctgggccctcggga
ctgccagggattgaaggagcagctggaaaaccaggcccccccgggggccaggggcctcgg
gggccacagggaaaacaaggaccaattggattgccaggttcaccgggaacaagtggaatg
gttggtcaagcaggagagaaaggagggcagggattgccaggaccttcaggtgaccctgga
tctgttggattggatggaccacagggccatcctggtccagttggttttgaggggccaaca
gggccaaaaggagaacatggatcacctggacccagtgggaagcctggtccaaatggctat
ccgggagatcagggtcctcagggctctcagggaatgcagggcgcaccaggaccacgtggc
aaagagggaggtattggacctcgaggtgatattggtgaccctgggcctaaaggacaaaag
ggtggccctggacatcgaggattctctggacgacaaggcccatctggatttttgggggac
agaggagagagaggactgaaggggaataaaggctacattggaccacaaggtcagaatgga
ttgatgggaaagtctggtccatcgggtttgatgggtctagagggtttgataggccttcgg
ggaccaccaggagcaaatggtttaccaggcccaaagggggaaactggatcacctggggca
cctggccatcctggagatcaaggcaatcggggaatagctgggcagagaggcttacaaggg
gttatggggaaggcaggacctcagggagccgtgggtcccagaggccccgagggcttattg
ggtccaaagggtatgccgggacaagagggacctaaaggtgaaccaggaagacaaggacct
ccagggcagatgggaccaccgggccttcctggtaacaaaggaccctctgcattactagga
aatgagggacatccaggagaaatgggagctgatggccctgttggcccaccagggccacaa
ggtccaagtggcaaatctgggcctcagggaagggatggaccaaaaggtcagaagggaaat
tatggtctagatggacctcctggaaaacctgggcatgctgggaagagagagaaaaaggga
aaagctggtcagaggggtctcagaggacctagaggggagaagggccaacaaggagcaatg
ggaaagactggacctcctggcagaccaggacaatatggtttaccaggtattcgaggcgag
aaaggagagagcggtgaaaaaggctttgagggagagaagggggaacttgggccacttggt
cctccagggggagatggactgaagggggagcagggcctaactggggaaaaagggagacag
gggctgaagggagagcagggggatattggcccaacaggtcaaagagggactccaggtcta
ccagggatgccgggcctgtttggagaaaagggtttaaaaggatatccaggacttgctggt
ccaaaaggaaagagaggacctcctggtccaccaggtcttccaggtccaccgggcttatct
ctgaacctaacactgactcagctaaaagacctcatgtacctctccgacaagtccaactat
ccacttcttaagaccctgctagactcccttcagcaagacctgcgattcttcatagatcct
ccagatggcactaaggagcatccagccaccacctgcttagagttgatgctcagtcatcct
aacttaagcagtggaatgtattatatcgacccaaatcagggcagtcctgctgatgctttg
ctggtatattgtaacttcagtgcaggtggacaaacatgtttgccacccctgcagccacag
atccccatgaaatcttggctcaaagataccatgccagactcatttacatggttgagcgct
atagatggtggctttcagttcgattacatggaaactggtgtggtacaaatgagattccta
cgactcaacagcaagtttgtgaagcagaacatcacattttcatgccagccaaacagccac
cagggctccaatgaaagagacattaagttccttgcagattcaagaagacagagcttcttg
ggaacattactggattgtgaacctgtagggtcaccgcatacaggccctcgggagtctgtg
ttccagtttgagactgaagacctggagcttttaccaatcagagatctggctttatttggc
cacagtgacacaacagaacagtttgagtttactgtaggacaagtctgcttcagctaa
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