Sinocyclocheilus grahami (golden-line barbel): 107565928
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Entry
107565928 CDS
T04918
Name
(RefSeq) zinc finger SWIM domain-containing protein 8-like isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sgh04121
]
107565928
Ubiquitin system [BR:
sgh04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul2 complex
Target recognizing subunit
107565928
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
107565928
NCBI-ProteinID:
XP_016106721
LinkDB
All DBs
Position
Unknown
AA seq
1929 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRVRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTHEQIIGWWYSVRTSASHSSASGHTGRSNGQTEVAAHACASMCDEMVVLWRLA
VLDPTMSPQRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVECCYFNWEVAY
PLPGITYCSADKKNTSFCWARMVQQQRGAKAGTSGEPGEGARCGASEGTSSEHKSRSNSH
LPQQEVAVRPKETIVGKRKGVSGVNSGGVLVCLGGRVSLSLQEGGKGMYKASSSSPSAGS
KAKLTQSNKGSCGSSSGISGKHPSAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEASNT
FDFLPPPPEMLPSPSPLLREPLKYSGTASKERAFEAKRVLPSSADAHACSIAAPVVVAIK
KEVEVEAGLDENGGDEDPVDDTLPSASLPIKAQRVRREGDGSGASGASGPQAAEAAGADA
MGEDDYQAYYLSAASEEGADRGVADGNHEEEPDIFAGIKPLEQEGRMEILFACAEALYAH
GYSNEACRLAVELARDLLANPPDLKVEQPQTKGKKSKVSTSKQTQVATNTLSKVAFLLTV
LSERLELHNLAFNTGMFSLELQRPPASTKALEVKLAYQESEVVALLKKIPLGLVEMTSIR
DRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNRNNEMPGDEELGFE
AAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILDKLLNRESQT
HKPQTLSSFYSSKPATSSQKSPSKHATHGASGASGGVSKHTPSATSAAVQGVTGGGAAGQ
QGSLVGGGVQSTVTGEGIADNRDQEGAQSTSCEQQSEAAPFKPEGTVPSRLALGGRGAYG
TRCWGSPVRQKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWTAASWGRGQDSDSISS
SSSDSLGSSSSSGSRRAGGGARAKSTDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAK
TVLIKAGGNSSTSIFTQPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSS
HVSWITGQAMEIGSAALNILVECWDGHLTPPEVASLADRASRARDPNMVRAAAELALSCL
PHAHALNPNEIQRALVQCKEQDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQ
TVGGGSGAQREGSGRCRANGGARRTAPEGVCGILDNTGLLDSSGVAAVTTTVTAAAVVPV
ISVGSTIYQSHALAGSAMAHTQGLHPYTTIQTHLPTVCTPQYLGHPLQHVPRPAVFPVSG
AAYPQVYDSRKAYQAGFKSVCLSSQGMHPAFIGAPYPFSVATGPHPPMAATALTFPGVPV
PSMTQIAVHPYHTAEAALPLSTTVAAGVHSGSAIQAIQGASLQGLSPQPASLVSAPFPVE
DEQHSQPISQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAA
RLGVNHVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAY
LQYIHHRLIHLTPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRI
SLEMATFSP
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgctgagtgggaagacggagagaggttctcctttgaagattcggac
cgttttgaggaggactccctgtgctcgttcatatcagaggcggaaagtctctgccagaac
tggagaggatggaggaaacagtctgccggcccaaattcacccactgtgaagattaaagat
ggacaagtcatccctctggtggagctgtcggccaagcaggtggcgttccatattccattt
gaggtggtggaaaaggtctatcctcctgttcctgagcagctgcaattgcggattgcctac
tggagcttcccagagaacgaggaggacatcagattatactcctgtttggccaacggcagc
cctgatgagttccagcgtggcgagcagctctatagagtgagggctgtgaaagaccctctg
cagataggtttccacctcagtgccacagtagtgtcgccccaggccggccaatcaaaagga
gcctacaatgtggctgtaatgtttgaccgctgccgcatcacttcctgcagctgcacctgc
ggagcaggagccaaatggtgtgcccacgttgtggccctctgcctcttcagaattcacaat
gcttctgcggtgtgtcttcgagcacctgtgtcagagtccctgtccagattacagcgggat
caactccagaagtttgcacaatacctcatcagtgaactcccacagcagatattgccgaca
gctcagcgtcttttagatgagcttctgtcctcccagtctactgctattaacaccgtgtgt
ggagccccggatcctactgctggcccttcagcctctgaccagagcacctggtatctagat
gagtccaccctcagtgacaacataaagaagaccttgcacaagttctgtggcccatcacct
gttgtgtttagtgatgtgaactccatgtacctgtcatccactgagcctccggcagctgct
gaatgggcttgtttgctgaggcccctgcgaggtagagagccagagggcatctggaacctt
ctgtccatcgtcagagagatgtttaagaggagagacagcaatgctgcgcctttgttagaa
atcctcaccgaacagtgtctcacccatgaacagatcattggctggtggtatagtgtgagg
acatccgcctctcacagcagtgctagtgggcacacaggtcgcagtaatggccagacggag
gttgcagcacatgcgtgtgccagcatgtgtgatgaaatggttgtcttatggagattggca
gtactagaccctaccatgagtccccagaggcgtttggaacttgctgcccagctaaagcag
tggcatctgaaggtaatagagattgtgaaacgggggcagcaccgcaagtctcttgacaaa
ctcttccagggcttcaaaccagctgtggagtgctgctacttcaactgggaagtggcctac
cctttacctggcatcacctattgcagtgcagataagaaaaacacctcattttgttgggcc
aggatggtgcagcagcagaggggtgctaaagctgggaccagtggggaaccaggagaagga
gctcgctgtggagcgtcagaaggtacttcctctgaacacaagtcacggagcaactcccat
cttccccagcaggaggtggctgtccgccctaaggagaccattgtgggcaagaggaaagga
gtgtcaggcgtgaacagtggaggcgtgctggtttgtctgggtggaagggtctctctctca
cttcaggagggaggtaaaggcatgtataaagctagtagctcctccccatcagctggtagt
aaggccaagcttacacagagcaacaagggttcatgtggaagttcgagcggcatcagcggc
aagcaccccagtgctaaacggcgaactagcagtgaggacagctctctagagcctgatatg
gcagagttgagtctggatgatggctccagtctggcacttggagcggaggcctctaacacc
tttgatttccttcctcctccaccggagatgttgccctcacccagccctcttctccgagag
ccactcaaatacagtggtactgcttcaaaagagcgtgcttttgaggcaaaacgtgtgctg
ccctcttctgctgatgcccatgcctgctccattgcagctccagtagtggtagctatcaag
aaagaggtggaagttgaggcaggtctggatgagaacggaggagacgaagaccccgtagat
gatactctgccctctgcatcactccccatcaaggctcagcgggtccgcagagagggagat
gggagcggggcttcaggggcctcaggacctcaggcagctgaggcagcaggagcagatgct
atgggtgaagatgactatcaagcttattaccttagtgctgcatcagaagagggagctgat
agaggggttgcagacggcaaccatgaggaagagccagacatctttgctgggattaaacct
ctggagcaggagggcaggatggagatactgtttgcctgtgcggaggctctctatgctcat
ggctatagtaacgaagcatgccgattggctgttgaacttgctcgagatctgctggctaac
ccacccgacctgaaggtggagcagccgcagacaaagggtaaaaagagtaaggtgtcaacc
agtaaacagacgcaggtggccactaacaccttgtctaaagtagccttcctgctgactgtg
ttgagtgagaggcttgagctccataacctggcattcaacactggcatgttctccctggag
ctgcagagaccaccagcttctactaaagctctggaggtgaagctggcatatcaggagtcc
gaggtggtggctctgctgaagaagattcctctgggtcttgttgaaatgacttccataagg
gaccgagcagagcagctccgtgatggaaacttctgtgactatcgaccggttttgcccctc
atgctggcaagcttcatatttgacgtactgtgcacccctgtggtctctcccacgggctct
cgacctcctagccggaaccgtaacaatgaaatgcctggtgatgaggagctgggatttgag
gcagctgtagcagctcttggtatgaagacaacagtcagtgaggcagagcatcctctgcta
tgtgaaggcacacggagagagaaaggagacctggctctagcactgatgatcacttataaa
gatgaccaaagcaagcttaaaaagattctggacaagctactgaatcgtgagagccagacc
cacaagcctcaaactctgagctcattttactcaagcaaaccagccaccagcagccaaaag
agcccatctaaacatgccacccatggtgctagcggagccagtggaggagtgtcaaagcac
accccttcagcaacatcagctgctgtgcagggcgtgactggagggggagcggcaggacag
cagggcagtttggtgggtggtggagttcagagcacagtgacaggagagggcatcgctgac
aacagagatcaagagggtgcacagtcgacctcctgtgagcagcagagcgaagctgcgccc
ttcaagcccgagggcactgtgcccagtcgtctggcactggggggccgtggggcatatggc
acacgctgctggggatcacctgtacggcagaaaaagaaacacaccggcatggcaagcatt
gacagcagtgctccagagaccacctcagacagctctcctaccctcagtcgacgtccactt
cgaggtggttggacagctgcttcctgggggagaggccaggacagtgacagcattagcagc
tcttcctctgattcacttggctcatcgtcatccagcggctcacgcagagctggaggagga
gccagagccaagagtactgacaccagcaggtataaaggccgccggcctgaatgccacgct
ccacacgtgcccaaccagccatccgaggcggctgcccatttttactttgagctggccaag
actgtgctgattaaagctggtggaaacagctccacctccattttcactcaaccctctgcc
agcggaggccatcaagggccccaccgcaacctgcatctgtgtgcctttgaaattggcctg
tatgcccttggcctgcataattttgtgtctccaaactggctgtcaagaacgtattcctca
catgtatcctggattacaggccaggccatggagattgggagtgctgccctcaacatcctg
gtggaatgctgggatgggcacctcacacctccggaggtggcgtcactcgctgaccgcgca
tcacgagcacgggatcccaatatggtgcgtgctgcggcagagctggccttgagctgcttg
cctcatgctcacgccctcaatcccaacgagattcagagagccctggtgcagtgcaaggag
caggataatgtgatgctagagaaagcttgcatggcagttgaggaggctgcaaagggaggc
ggtgtttatcctgaggtcttgtttgaggtggctcaccagtggtattggctgtacgagcaa
acagtgggtggaggctctggggcccagcgagaggggtctggtcgctgtagggccaatggt
ggagcacgaagaacggcacccgagggagtctgcggtatcctggataacacaggactcttg
gactcttcaggtgtcgcagctgtaactacaacagtgactgcagccgctgtagttcctgtc
atttctgtcggctccaccatctaccagtcacacgcgctggcgggctcagccatggcacac
acgcaaggcctgcatccctacaccacaatccaaacccatctgcccaccgtctgcaccccg
cagtatttgggtcacccccttcagcacgttccccgtcctgctgtcttccccgtgtctggg
gcagcctacccacaagtatatgactcgaggaaggcgtatcaagctggttttaagagcgtc
tgtttgtcttctcagggaatgcaccctgcttttattggtgctccgtacccattctctgtg
gctactggccctcatcctcctatggcagcgactgctctcactttccctggagtcccagtg
ccgtccatgactcagatcgctgtccacccataccataccgcagaggcagccctgcctctt
agcactactgttgcagcaggagtacactcaggctccgccatccaggccattcagggggct
tctcttcaaggactctcgccccagcccgcctcactggtcagcgcacccttccctgtggaa
gatgagcagcacagtcaaccaatcagccagcagggcctgcactacctccactcggcctac
agagtcggcatgctggccttggagatgttgggaaggagggcccacaacgatcatccaaac
aacttttcccgtagccccccgtacaccgaagacgtcaaatggctgttgggcctggctgcg
cgtcttggtgtgaaccacgtgtaccagttttgtgtgggggcagcgaaaggtgttcttagt
ccgtttgtcctgcaggagatcattatggaggctctgcagaggttaaaccctgcacatatc
catgcacacctccgcactcctgccttccaccagctcgtgcagcgctgccagcaggcctac
ttacagtacatccaccataggttgatccatctgactcccgcagactacgacgactttgtg
aacatcatccgaagtgcccgcggggcgttttgcctgacaccagttggcatgatgcagttc
aacgatgtgctgcagaacctgaagaggggcaaacagactaaagaactatggcagcggatc
tcgttggagatggccactttctcaccctga
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integrated database retrieval system
