Sinocyclocheilus grahami (golden-line barbel): 107575375
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Entry
107575375 CDS
T04918
Name
(RefSeq) collagen alpha-2(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107575375
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107575375
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107575375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COLFI
Collagen
Motif
Other DBs
NCBI-GeneID:
107575375
NCBI-ProteinID:
XP_016117248
LinkDB
All DBs
Position
Unknown
AA seq
1163 aa
AA seq
DB search
EGKANNGKADKPKTAPAKAAPAKTKPTTKPKAKPISKTKPTLASKLASKPKVTPAPKIEN
KKKANDNGKNNGQAKVNGNGNGNGKSNGNGKDANGKAKAGSNGKANNNGNGKAAVEKKAK
GEAKANGNGAKTVKTEKAAVTKETVAKKSETTAKKAETRPQPAKDKTKANAVPKAKPKAT
KPVVEKFPTKVAKTPKPVAFKPTPAPLPLPPKPKVLDVNNFKSMSKTFPPFDKAAVSGTT
MSSPEIPKKKPTNGYQQVQNQEPALAFQSCISNLAILVVQDRVHKVDETVGAEEVDATKT
GGEGVSQTPDEPFIEEYITSDFGTKEYDYSYRDYNEPIIESKTEDTFGPALSAVTDEGGG
MLIEGPPGPEGPAGLPGSAGPQGPPGSVGDPGERGPRGPHGLSGPPGKSGRRGRAGADGA
RGMPGESGIKVGHLNPFCVCGEKGPTGKPGLPGMPGGDGPPGHPGKEGPTGTKGNQGPNG
PQGSIGYPGPRGIKGTQGIRGLKGHKGEKGEDGFPGIKGDFGVKGERGEVGVPGPRGEDG
PEGPKGRVGPLGEIGPIGLVGEKGKLGVPGLPGYPGRQGIKGSLGFPGFPGANGEKGARG
LIGKTGPRGQRGPTGPRGQRGPRGATGKSGAKGGSGSDGPSGPPGERGLTGLQGPNGFPG
PKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGPSGETGPMGERGHSGPPG
PPGEQGLSGPSGKEGTKGDPGPSGGPGKDGPPGLRGFPGERGLPGTSGTGGLKGNEGPAG
PPGSAGSPGERGAAGTAGTVGPPGRPGPQGPPGAAGEKGVPGEKGPIGPAGRDGIQGPVG
LPGPAGPPGTAGEDGDKGEVGEPGQKGAKGSKGEHGPPGPLGPMGPVGQPGAAGADGETG
ARGQQGPFGAKGDDGTRGFPGPPGPIGLQGLPGPAGEKGETGDVGPMSMRFPLGTQESPA
RTCQDLHLSQPDLKDGEYWIDPNQGCARDSFKVYCNFTAGGETCLYPSKAVENVKMNTWP
KEKPGSWFSQFAKGSKFSYVDWSGEPVGVVQLGFLRLLSVQARQNLTYHCQRSVAWADLT
ADSGYQRALHFQGANDEELSYETSPYIKALVDGCSYRKGLDRTVLEVNTPQVEQLPLLDI
RISDFGEDNQKFGFEVGPVCFLG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
gagggaaaggcgaacaatggcaaagctgataagccaaaaactgccccagccaaagctgct
ccagctaaaaccaagccaactacaaagccgaaggccaaacctatctcaaagacaaaacct
actttagcttctaaactagcatccaaaccaaaagtaacaccggccccaaagattgaaaac
aaaaagaaggcaaacgacaatggaaaaaataacggtcaagctaaagtaaatggtaatggc
aatggcaatggcaaaagcaatgggaatgggaaagatgctaatggtaaggctaaggctggc
agcaatggcaaagccaataacaatggcaatgggaaggcagctgtggagaaaaaagcaaaa
ggggaagctaaagctaatggcaatggtgcgaaaacagtgaagactgaaaaggcagcagtg
accaaagaaacagtagcaaagaagtcagagacaactgcgaagaaagcagagaccagacca
caaccagccaaagacaaaacaaaagccaatgcagtacctaaagcaaagcctaaagcgacc
aaacctgtggtagaaaagtttccgaccaaagtcgctaaaactccaaaacctgttgctttt
aaacccacccctgcgcctttgcctctccctccaaagcctaaggtcttggatgtcaataac
ttcaaatcaatgtccaaaactttcccacccttcgacaaggctgctgtgagtggcacaacc
atgtcttctccagaaatacccaagaagaaacccaccaatggttatcaacaggtacaaaat
caagagcccgcgttggctttccagagctgtatttccaacctcgccatcctggtagtccag
gaccgcgttcataaagttgacgagactgttggcgctgaggaagtagatgcgaccaagaca
ggtggtgaaggggtgtctcaaacgccagacgagcccttcattgaggagtacattacaagc
gactttggaacaaaggagtatgactattcctacagggactacaatgagcccatcatcgaa
agcaagacggaagacacctttggccctgccctgtccgctgtgacagatgagggaggtggc
atgttgattgaaggaccacctggaccagaaggaccagcaggtctccctggctccgctggc
ccccagggaccccctggttctgttggtgatcctggtgagaggggccccagaggtcctcat
ggattgtctggtcctcctggtaaatctggtcggaggggtcgggctggtgctgatggagcc
agagggatgccaggagagtctggaattaaggtcggacatcttaaccctttttgcgtctgt
ggagagaaagggcccacaggaaagcctggtttaccaggaatgcccggaggtgacggtcct
ccaggtcatcccggaaaggaaggccccactggaaccaaaggaaatcagggtcctaatggt
cctcaggggtctattggctatcctggccctcggggaattaagggaactcaaggtatccgt
ggactgaagggccataagggagagaagggagaggatggattccctggaatcaaaggagac
tttggtgtgaagggagagaggggagaggtgggagtgcctggcccaagaggagaggacggt
cctgagggtccgaagggtcgtgtcggtccccttggtgaaatcggtcctattggcctggtg
ggagagaagggtaaacttggtgtgcctggacttcctggatatcccggaaggcaaggaatt
aagggctccctgggtttcccaggattccctggtgcaaatggcgagaaaggcgcgaggggt
ttgattggaaaaactggaccaagaggacagagagggccgacaggtcccagagggcagaga
ggaccccgtggggcaactggaaaatcaggcgctaagggcggatctggcagtgacgggcct
tctggaccacctggggagagaggactaactggacttcaaggtccaaatggattccctggg
ccgaagggacctcctggacctccagggaaagatggactgcctggacaccctggacagaga
ggcgaagttggtttccaaggcaaaactggaccacctgggccaccgggagttgttggacca
cagggtccctctggtgagactggaccgatgggtgagcgtggtcattcaggacccccagga
ccacccggtgagcaaggtctttctgggccttctggtaaagagggaaccaaaggagatccc
ggtccctccggcggccccggtaaagacggaccccctggactgagaggattcccaggagag
agaggactgccaggaacttcaggcactggaggactgaaaggaaatgaaggccctgctgga
ccacccgggtctgctggatcacctggggagagaggagcagctggcaccgcaggtactgtt
ggcccacctggacgacctggacctcaggggccccctggagctgcgggagagaagggagtg
ccaggagagaaaggtccaattggtccagctggtcgcgacggcatccaaggtccagttggt
ctcccaggccctgctggacctccaggtactgctggagaggatggagacaagggtgaggtt
ggagagccaggacaaaagggagctaaaggatccaagggagaacatggtcctcctggtcca
cttgggccaatgggtcctgttggacagcctggtgcagctggtgctgatggtgagacaggt
gcgaggggtcaacagggaccatttggcgctaagggagatgatgggacaagagggttccca
ggtcctccaggccccatcggactgcagggtttgccgggcccagctggagaaaaaggagag
acgggagatgttggtccaatgagcatgcgcttcccgctgggaacacaggaaagcccggcc
cgcacctgccaggacctccacctcagccaaccagatctgaaagacggtgagtactggatt
gatccaaatcaaggctgcgctcgggactcgttcaaggtttactgtaacttcactgccgga
ggagagacgtgcttgtatcccagcaaagctgtggaaaatgtgaagatgaacacttggcca
aaggagaagcctgggtcctggtttagtcagtttgcaaagggcagcaagttttcatatgtt
gactggagtggagagcccgtgggtgttgtccagctgggattcctgcggttgctcagcgtt
caggcccgtcaaaacctgacctaccactgccagcgatcagtggcctgggcggacctcact
gccgacagcggctaccagagggcgctacacttccagggtgccaatgatgaagagctcagc
tacgagaccagcccctacatcaaagccctcgtcgacggctgctcttatcgtaaaggcttg
gacaggacagtgctggaggtgaacacacctcaggtggagcagctccctctgctggacatc
aggatctcagactttggggaggacaatcagaaatttggttttgaagtgggacctgtctgt
ttcctgggataa
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