Sinocyclocheilus grahami (golden-line barbel): 107594448
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Entry
107594448 CDS
T04918
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107594448
NCBI-ProteinID:
XP_016139988
LinkDB
All DBs
Position
Unknown
AA seq
1432 aa
AA seq
DB search
MDKLTTTKIVKVEGGSGGSGKEIQKHTETVTTTRLTSLPPKGKSSSVSSQQVLTSIVNSS
GSGGAVLVEKITQSSAEGGAAQSYVISSSSSGRSASSSSGAGSVIGGFEEKSREISVTGP
ISSSTVKSSSSTVKSSSSVSTSNTTVGGSSATGGDLSSGYGCSSSSEFASGSSGSMNISR
GGAGSSAVMSAGGTSSFMTVTKFSSSSPSGTRKGLSYSTVPAERKTSLSFHTGGYDGSSS
GNSSPEYIKKESVATRGRTQTRESEIRARLQSASPSTRWTELDDVKRLLKGSRSGSISPP
RSPTNTLPIPKKASVDTRHESQSGCDGTVLDAGFSTYYTNPNNLSYTTLQQPSSPTGGMQ
NNLTLSSSALSSAVYGMHNNLSTSGGALMVNGISAGQVYGALKNVGSAGLATTVTTVPSS
PITADDVFVKDGKFIGIGKENVAAKKETERLIMSKNTGKQFITSTTSAGADSEDSLKREK
KMISSTTESTMTASRASTKDKATYAEIRKDESDSAGLGFCSCCSWWKWLLALILGLLLLL
GLLCGLIALGEEVRKLKARVDAIDGGESAVSARISRLSASSAVNVIDPLESSYAERIPGV
RADNTINLGSASAAQDPVVLQKTIQQILRSELQSDTVRASLATSLKGERGEPGPKGDQGP
PGVIGDIGFPGITGPPGLIGHPGQEGPRGPKGIAGESGNDGLPGLRGREGPAGHRGEPGP
PGFGEKGEKGSSGDVGAPGLAGPPGPVGPKGDAGAQGIPGLQGAPGPQGFRGDSGDPGPK
GDKGPAGPLGVKGDQGERGPRGATGEPGQVGSSGPPGEKGLKGSAGAPGPDGVKGIRGDQ
GPIGLPGARGPSGSPGDAGIPGTPGLQGPPGLPGTPGQPGAKGEPGEPGRVIFAGANTNT
VGVPGPPGPPGAPGPSGPPGLSGPIGPAGLPGSPGSKGDKGDKGEDGKPGVSESAGKKAA
SEPGPPGPPGPAGPHGPPGNDGKPGIGQPGPPGEKGEPGSFVPTSETFFAGPPGPPGPKG
SQGDIGPQGFPGQPGLPGEPGIGIPGQPGSQGPRGEQGPEGPPGPLGPQGPMGPMGPEGP
KGDAGVPGAPGIPGYSYGGGSRSAPGPPGLPGPPGPAGAPGSSGGGSPDVVQQISDYLRS
EPIREYLTGPPGPPGPPGTPVSGSEDSLAKRVIEYLQRDEVRQYLIGPPGPPGPPGGYGV
PGGYGFNAQEVAGRVLRLMNDSGFRGLPGPPGPPGPQGAPGSAGGLVSYAANENQQQIRA
EPQEYINRHPSSGENLDYAVIAKQVSDYIKSHGLLQGQDGLTGIPGPQGPAGFPGPPGHD
GFPGLPGPPGIRFPGPPGHDGFPGLPGPPGISREFSSSNMTAIMDYIRENHVIGPPGVPG
QKGEPGYPGPPGPKGDRGFQGQPGFPGMRGQKGEKGEASYVTRRRRRSSAFS
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggacaagctaaccacaaccaagattgtgaaagtagaggggggatctggaggatctgga
aaagaaatccagaaacacacagaaactgtaacaaccacaagactgacatctctaccccca
aagggcaagagcagctcagtgagcagccaacaggtactgacctccatagtgaacagctca
ggctctggaggagctgttctggtggagaagatcacccagagcagtgctgaaggaggcgct
gcccaaagttatgtcatatcctcctcctcgtctggacgttcagccagcagcagttcagga
gcaggatctgtgattggtggattcgaagaaaaatctcgtgaaatcagtgtaactggaccg
atcagtagctctacggttaaaagctctagttctacagttaaaagctctagcagcgtctct
acctccaacacaacagttggcggttcctcagcaacaggtggagatctttcctctggatac
gggtgcagctcctcctctgagtttgcatctggttcctcaggcagtatgaatatatccaga
ggtggagctggctcctctgcagtcatgtctgccggaggaacttccagcttcatgactgtg
accaagttcagctcctcgtcccccagcgggacacggaagggtttgagttacagcacagtt
cctgcagagaggaagaccagtctgagctttcacactggaggatatgatgggagctccagt
ggcaattcttcccctgaatacattaagaaagaaagtgttgccactagaggacgcactcaa
acacgagaaagcgagatcagagccagattgcagagtgcctcaccctccactagatggaca
gagctggatgatgtgaagagattactgaagggaagtcgctccgggagcatcagtccaccg
cgctctcccaccaacactctacctatccccaaaaaagccagtgtggacacccgtcatgag
agccagtcgggttgtgacggcacagtcctggatgcaggattcagcacatattacaccaac
ccaaacaatctcagttacaccacactgcaacaaccatcatcacccacaggtggcatgcag
aataatctgaccctcagctcatctgccctcagtagtgcagtatatgggatgcataataac
ctgtcaacatctggtggtgctctcatggttaatggaatcagtgctggccaagtgtatggg
gcactgaagaatgttggcagcgctggattggccaccactgttaccactgttcccagcagc
cctatcaccgctgatgatgtgtttgtgaaagatggcaagtttattgggattggaaaagaa
aatgtagccgctaagaaagagactgagcgactgatcatgtccaaaaacactggcaaacag
ttcatcacttccaccaccagtgctggagcagattctgaagattcactcaagagggagaaa
aagatgatctccagcacaactgaatccacgatgactgcttccagagcctcaacgaaagac
aaggcaacctacgcagagatccgtaaagatgagtctgacagtgcaggactaggattctgt
tcctgctgctcgtggtggaagtggcttctggcactgattttaggtcttctccttctactg
ggactcctctgtggtctcatcgcactgggtgaggaggtccggaagctaaaggctcgtgtg
gacgctattgatggtggggaaagcgcagtctctgctcgaatcagtcgtttgtctgcctcc
tcggctgtgaacgtcattgatccactggagtcttcatacgctgagcgcatccctggcgtc
cgtgccgataacactataaacctgggttcagcatctgctgcacaagaccctgtggttctg
cagaagaccatccaacagatcctcagatccgaacttcagtcagacaccgtcagagcttca
ctggcaacttcacttaagggtgagcgaggagagcctgggcctaaaggtgaccaaggacct
cctggagtgataggtgatatagggtttcctggaattacaggtcctcctggtctcattggt
catcctggacaggaaggtcctcggggaccgaaaggaattgcaggtgaatcaggaaatgac
ggtttacctgggctgaggggtcgagaggggccagcgggtcacagaggagaaccgggaccc
ccaggatttggagagaaaggagagaaaggttcatccggcgatgttggtgcacctgggcta
gcaggaccaccaggccctgtgggacccaaaggtgatgcaggtgcacaaggcataccaggt
cttcaaggagctcctggaccccaaggcttccgtggagattctggtgatcctggacccaag
ggtgacaaaggacctgctgggccacttggggtcaaaggcgatcagggagagagaggacca
cgtggtgccactggtgagccaggtcaggtcggatcatcagggcctcctggtgagaaaggt
cttaaaggatcagcaggtgctcctgggccagatggtgttaaaggaattcgaggggatcaa
ggtccgattgggttgcctggagctcggggaccctcagggtctcctggagatgcaggaata
ccaggtacaccaggactccaaggaccaccaggtttgccaggtactccgggccagccagga
gctaaaggtgagcctggtgagcccggaagagtcatttttgcaggcgctaatactaacact
gtgggtgtacctggaccccctggacctcctggagctccaggtccttcgggaccacctgga
ctatcaggtcctattggtcctgctggtcttcctggttcacctggttcaaagggagataaa
ggagacaaaggagaagatgggaagcctggagtctctgagagtgcagggaagaaagctgct
tctgagcctggtcctcctggcccacctggtccagcaggaccacacggaccgcctgggaat
gatggaaaaccaggtattggtcaacctggtcctcctggtgaaaaaggtgaaccgggaagc
tttgtacccacttcagaaaccttctttgctggaccacctgggcctcctggaccaaaggga
tcacaaggtgatattggccctcaaggtttccctggccagcctggactacctggagaacct
ggaattggtattccaggacagccagggtcacaaggaccacgtggagaacaaggtcctgag
ggtccaccaggaccactgggacctcaaggaccaatgggtcccatggggccagaaggtcca
aaaggtgatgctggagtcccaggggcccctggcattccaggatattcctacggtggagga
tccagaagcgctccaggaccaccaggtctacctggacccccagggcctgctggagcaccc
ggttcatcgggtggtggctcaccagatgttgttcaacagatttcagactacctcagaagt
gaacccatcagagaatacctgaccggacctccaggcccacctggaccaccaggaactccc
gtatcaggctctgaagattctctggctaaacgtgttattgaataccttcaaagagatgag
gtgaggcagtacctgattggtcctccagggcccccaggacccccaggtggatatggtgtg
ccaggtggatatggctttaacgctcaagaagttgctggacgagtgctaagactgatgaac
gattctggtttcagaggtctgccaggacctcccggtcccccaggacctcaaggagcacca
ggaagtgccggaggactagtgtcttacgctgctaacgaaaaccaacagcaaatccgcgca
gagcctcaggagtatatcaataggcacccgagctctggtgagaatttggattacgcagtt
atcgctaaacaggtttccgattacattaagtctcatggcctgttacaaggccaagatggt
ttgacagggattccaggtccacaaggtccagcaggattccctgggccccctggacatgat
ggattccctggactccctggacctccaggaataagattccctgggccccctggacatgat
ggattccctggactccctggacctccaggaataagtcgagaattttcttcctccaatatg
acagcgatcatggactacatcagagaaaaccatgtgattggaccaccaggtgtaccaggg
cagaaaggggagcccggatatcctggaccaccaggaccgaaaggtgacagaggattccaa
ggtcaaccaggcttcccaggaatgagaggacaaaagggagagaagggtgaggcttcatat
gtcactcgcaggaggaggaggagcagtgcatttagctag
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