Sinocyclocheilus grahami (golden-line barbel): 107595721
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Entry
107595721 CDS
T04918
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107595721
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107595721
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107595721
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
107595721
NCBI-ProteinID:
XP_016141702
LinkDB
All DBs
Position
Unknown
AA seq
1815 aa
AA seq
DB search
MMLASVLWTAVLFTLVKATILDSGPTEAPDVESGSGMLLTEAIDLLDHLWQVANHSNASV
TQESQRCPVLHVGQYSTLYIPLRQVFGHRFGDEFSLLLHLRSSQSEDRSVLTFLCPDGHI
LLQIRISAYTFTFISTQQRHYEFPVAVLSDGGWHHVAVSVSSGRLALYVDCSMVESVDWA
YKDGLGISTDGLVMVGGIIEGFETPFEGDLMQVAFLMGEPDAARDQCAVLQPQCGGTGHK
PPRSPRIHTDEELLLSSNDLEDLLETAEDSDSIRVKLTGLHRRGIIRGDGTLPTGSKRPG
FVGRGDVFEVDEDTDLVDQNILSKNGGKPSKTFPTETTGSRDGKPDSTSKRLDENITTDK
HKPDKPSPKKPVDTTIINLDVQVPEKPTGSIVPSSEIHLETTSSPEDRESNLLKEDLGAT
TQAPLRTTSWEGISKGSGRKTSKTPDIPVGHGWGSEEHPGTVILTGRHRDLVRGSDGNMY
RIQRGPMGPVGPRGEPGCPGSDGYPGPKGDKGVIGLKGRPGRRGVPGPPGPPGLPTFYLW
RNTPEEWAAFQQTSFFQLLRAGWPRAQGPPGPEGEMGKPGPQGPPGEPGEQGRPGRLGDM
GDRGLKGVIGRAGLFGKDGENGLDGPQGPPGIPGPKGPLGYKGESGSPGEKGEEGIAGPK
GPCGNMGKVGEKGSKGAPGSPGPAGPSGPQGMRGLEGPEGHPGPDGDDGMEGPPGLPGPP
GAPGWTGVVGAQGPNGSRGEPGPPGAVGLPGPQGPQGLEGQIGSPGPRGLQGLSGREGLP
GPKGEHGPAGPVGLRGEPGFEGLMGVLGIQGPKGFTGIKGNRGPDGDQGDIGPKGNKGAR
GAPGVQGIQGEQGPTGFPGFPGVRGLPGPQGIQGEDGEAGPHGKVGKEGPKGSKGLEGLP
GKPGPRGLKGRTGQRGHTGMPGLPGLPGPPGPVGAEGKPGTQGLQGLVGNAGSKGLMGLQ
GIPGERGQDGPPGSMGPPGREGPMGSPGPPGERGFPGKTGAVGPQGPVGMYGFPGNVGMR
GRPGHSGDRGEPGLRGPPGPTGKPGQPGPRGPVGEKGPPGPQGRQGDPGHRGTDGPCGPP
GLQGVSGVIGKPGPRGSKGPPGDPGLNGPPGIPGPQGANGLAGIDGEKGEKGMMGHPGDD
GPLGLEGPQGTSGPAGLEGPSGRKGDKGDRGPFGKPGLQGPKGDIGPPGAEGPMGPPGPA
GSEGDAGPVGIAGDPGPKGEKGDIGPQGFTGLEGPWGDVGEQGERGLKADKGQIGLQGES
GLMGGVGPPGLKGVEGGPGHPGLVGPDGPPGSKGEVGPNGLLGEPGDAGPEGIVGPKGMR
GDAGKAGTQGGVGSVGPQGLLGPKGLTGPEGEKGDSGDKGEPGVEGPDGLQGIQGPPGLP
GLEGPQGEAGVRGSPGLPGAQGRMGNPGPEGREGMKGEKGDQGKDGTPGKMGHIGRRGKR
GKAGLRGTRGPRGEKGERGDVGEKGLPGWGGSMGIQGLRGEPGEQGVKGAEGEKGDQGPL
GPPGKDGLKGSMGPIGPPGPPGPKGDQGNIGPAGPRGAPGIPGLPGLFGDKGLKGFQGPP
GPPGRRGLPGPPGPPGPAGVSVNLTQIKDLMYSSDKPNYPLIQTLLDSLYNDLRLLVDPP
DGSKQHPASTCLELWLCHPNYTSGFYYVDPNQGSPLDALLAYCNFSESGAETCLHPRDAQ
LPIRTWLNDSGNNSKFYWFSSLEGGFQFEYPALSVVQLRLLRLQSNRAEQRVTYSCYPGH
RLGQTQQQVQFLTDSVKQSYLGELQDCVSAKEVDPGPRESVFQFEGMDLLPLRDIGILGN
SSYEFGFTIGPVCFR
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atgatgctcgcgtctgtactgtggacagctgttctatttactcttgtaaaagccaccatc
ctggacagcggtccaactgaagcaccagacgtggagagcggctcggggatgctgctgaca
gaagcaatagaccttcttgatcatctgtggcaggtggctaatcacagcaatgcatcagta
acacaggaaagccaaagatgtccagtcctgcatgtaggccagtactccaccctctatata
ccactacggcaggtgtttggacacaggtttggtgatgagttcagtttgctgttgcatttg
cgtagctcccagtctgaagaccgcagtgtgctgactttcctctgtccagatggacacatt
ctcctgcagattcgcatcagtgcctacacttttacctttatcagtacccaacaacgacac
tatgagttccccgtggcagtgctgtctgatgggggttggcaccacgtggcagtcagcgtc
tcctcaggccggttggcgttgtatgtggattgctccatggttgagagcgtggactgggct
tataaggacggtttgggaatctcaactgatggcctggttatggtgggaggaatcattgag
ggttttgagacaccttttgagggtgatctgatgcaagtggcatttctgatgggagaacca
gatgcagctcgagaccagtgtgccgttttgcaaccccagtgtggtggaaccggacacaaa
ccacctcgctctcctcgcatacacactgacgaggaacttctgctgtcctcaaatgacctg
gaggacttattagagacagcagaggacagtgactctattcgtgtaaaactgactggtctc
catagacgtgggattatacgtggtgacggtactctgcctactggatccaaacgtcctggc
tttgtggggcgaggtgatgtgtttgaggtggatgaggatacagacctggtagaccaaaac
atcttgtccaaaaatggtggtaaaccttccaaaactttcccaactgaaactacaggcagc
cgtgatggaaagccagactccacatccaaacgtttagatgaaaacatcaccactgacaag
cacaaacctgacaaaccttcaccaaagaaaccagtggataccacaattatcaacctggat
gttcaggtacctgagaaacctaccggaagtattgtacctagtagtgaaattcacctggaa
accacctccagtcctgaggatcgagaatccaacttattaaaagaggatttgggggccacc
acacaggctcctctgagaacaacttcttgggagggcatctcaaaaggaagtggaagaaaa
acatccaaaactccagatatccctgttggacatggctggggatctgaggagcacccaggt
actgttatacttacaggaagacatagagatcttgtgcgtggctctgatgggaatatgtat
cgcattcaaagaggacccatggggccagtggggccccgaggtgagcctggatgtcctggg
agtgatggctatccaggacccaaaggtgataagggtgtcattgggcttaagggccgtcca
ggtcgccgtggagtcccaggacctcctgggccacctgggctgcccacattctacctgtgg
agaaacacacctgaggaatgggctgcatttcagcaaacttcattcttccagcttctccgt
gcaggttggcctagagcgcaaggtccgcctggtccggaaggagagatggggaaacctggg
ccgcagggcccacctggggagccaggtgaacaaggacgtccaggacgtttgggagacatg
ggtgaccgtggcctaaaaggtgtgataggcagagcaggtctctttggaaaggatggagaa
aacgggctggatgggcctcaggggcctccagggattccaggaccaaagggtcctttaggc
tataaaggagaatcaggctcacctggagagaaaggagaggagggcattgctggaccaaag
ggtccatgtggaaatatgggaaaagtcggtgagaaaggttcaaaaggtgcacctggctct
cctggtcctgccggcccttctggtccacaaggcatgagagggttggagggccctgaaggt
catccagggcctgatggggatgatgggatggagggaccaccaggccttccaggtccacca
ggagctcctggttggacaggtgtggttggtgcccaggggcctaatgggtctcgtggggag
cctgggcctccaggagctgttggtcttccggggccacagggtccccagggattagaagga
cagattgggtctccaggaccaaggggtctgcaggggctgtcaggccgggaaggtttacct
ggtcccaaaggagaacatggccctgcagggccagtgggcctcagaggggagccaggattt
gaaggattaatgggtgtattaggaatacaaggtccaaaaggttttactggtatcaaagga
aacagaggacctgatggagaccagggagacattggacctaaaggaaacaaaggtgctaga
ggagccccaggggtacagggcattcaaggtgagcagggaccaacaggctttcctggtttc
ccaggtgtcagaggtctgccaggaccacaggggatccagggagaggatggagaagctggt
ccgcatggcaaagtgggaaaggaggggccaaaggggagcaaaggtcttgaaggcctccct
ggaaagcctggtcctagaggcctaaagggtcgaacagggcagaggggtcacactggcatg
cctggacttcctggtttacctggcccacctggacctgttggagctgaaggaaagcctggt
acacagggactgcaaggccttgtgggtaatgcaggaagtaaaggactaatgggattgcaa
ggtattcctggagaacgtggtcaggatggacccccaggatctatgggtccacctggacgg
gaggggcctatgggcagtcctgggccaccaggagagaggggtttccctggaaagacagga
gcagtgggaccacagggccctgttggcatgtatggttttccaggaaacgtgggtatgaga
ggaagaccgggccacagtggagacagaggagagccaggtctaagagggcctcctggacca
actgggaaacctggacaaccaggtccccgtggtccagtaggagaaaagggaccaccagga
ccccagggccgtcaaggagatcccgggcatcggggaacagatgggccatgtggtcctcca
ggacttcagggggtcagtggtgtcattggaaaaccaggaccccgtggaagtaaaggaccc
ccaggggaccctgggctaaatggtcccccaggtattccaggtccacagggggcaaatgga
ctggcaggtatagatggggagaaaggagaaaagggaatgatgggccatcctggtgatgat
gggcctctcggactggaaggaccacagggtacatctggtccggcaggtttggagggacct
tctggaagaaaaggtgataagggggacagaggtccctttggaaagcctggtcttcaagga
ccaaaaggagacattggccctccaggtgctgaaggtccaatgggtccaccaggcccagca
ggcagtgagggtgatgctggtccagttggcattgctggtgatcctggccctaaaggagag
aagggtgatattggcccacaaggatttactggtttagaggggccgtggggagacgtgggg
gagcagggagagagggggctcaaggcagacaagggccaaattggactccagggtgagtca
ggcctcatgggtggtgttggacctcctggcctaaaaggtgtagagggtggacccggccat
ccaggattggtggggccagatggacctccaggaagcaagggagaggttgggccgaatggt
ttacttggtgagccaggagatgctggacctgagggaattgtaggtcccaaaggcatgcga
ggtgacgcaggaaaagccgggacacagggaggtgttggttcagtaggtccccaaggtctt
ttgggccctaaaggtctcacaggacctgaaggggagaaaggagactcaggagataaagga
gaaccaggggtggaggggccagacggccttcaaggcattcaaggaccaccgggactgcct
ggtttggagggtccacaaggtgaggcaggggtacgtggctcaccaggtctgccaggagct
cagggccggatgggtaacccaggacctgaaggaagagaaggcatgaaaggagagaaggga
gatcaaggcaaagatggaacacctggaaaaatgggtcacattggacggaggggtaaaaga
ggcaaggcagggttgagggggaccagaggacccagaggagaaaagggagagaggggggat
gtaggagagaaaggacttcctggatggggaggaagtatgggaatccaaggactgagagga
gagcctggggagcaaggtgtcaaaggagcagagggtgagaaaggagatcagggaccactt
ggtccaccagggaaagatggcttgaaggggagtatggggcctattggtcctcctggaccc
ccaggaccaaagggggatcagggaaatattggtcctgctgggcctagaggggcacctgga
atacctggactaccgggcttgtttggagacaaggggcttaagggatttcaggggcctcct
ggaccccctggaaggaggggcttgccaggtccaccggggcctccagggcctgctggtgtt
tctgtgaacctgacccagatcaaggatctgatgtacagttcagacaagcccaattaccct
ctgattcagacactgctggactctctgtacaatgacctccggctgctggtggaccctccg
gacggtagcaagcaacacccagcctccacctgtctggagctgtggctgtgccatcccaac
tacaccagcggattctattacgttgacccaaaccaaggcagtcctttagatgctcttttg
gcctactgtaacttttcagagtcaggagcagagacctgccttcaccccagagatgcacag
cttcccataaggacttggctgaatgactcagggaataacagcaagttctactggttcagt
tcactggagggaggttttcaatttgagtatccagccctcagtgtagttcagctgcggctc
ctacgactccagagcaacagagcagaacagagagtaacttactcctgttaccctggacac
cgactgggccagacacagcaacaggtccagttcctcacagactccgtgaagcagagctat
ttaggagaactgcaggattgtgtgtctgcgaaggaagtggatcccggaccgcgtgaatct
gtgtttcagtttgagggcatggacctgcttcctctacgtgacataggaatcttgggcaac
agcagctacgagtttggcttcacaatcggccctgtgtgtttccgctag
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integrated database retrieval system
