Streptomyces aurantiacus: GCM10017557_13950
Help
Entry
GCM10017557_13950 CDS
T07085
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgm
Streptomyces aurantiacus
Pathway
sgm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCM10017557_13950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgm03400
]
GCM10017557_13950
Enzymes [BR:
sgm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCM10017557_13950
DNA repair and recombination proteins [BR:
sgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCM10017557_13950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCL26536
UniProt:
A0A7G1NYC4
LinkDB
All DBs
Position
complement(1666861..1667844)
Genome browser
AA seq
327 aa
AA seq
DB search
MTADGARTVRAGRRTVEVHRPDKVLFPGGGGAKEYTKADLVAYHQEIAPFMLPHLRGRPL
MLERYPDGLDGPRFIQKNVQGHYPDWIGRVEVPKEGGTVLHPVCEDTATLVYLADQACLT
LHRWLARVSTGGPADGTSGDAAGDPSGGAVDRPDRLVFDLDPATDDFEPVRDTARLLGEL
LDQLGLPAALMTTGSRGLHVVVALNGRHDFDEVHTFAKDVADTLAEAHPDRLTTQARKKD
RGDRLYLDIQRNAYAQTTVAPFTVRARPGAPVAMPVTWEQLDEPELGPRRWTIADALDQA
RTEPWSGLPRGGRALGPARRRLDALRG
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgacggcgcccggaccgtacgcgcgggccggcgcaccgtcgaggtgcaccgg
ccggacaaggtgctgttccccggcgggggaggggccaaggagtacacgaaggcggacctc
gtcgcgtaccaccaggagatcgccccgttcatgctgccgcacctgcgggggcggcccctg
atgctggagcggtacccggacgggctcgacgggcccaggttcatacagaagaacgtccag
ggccactatccggactggatcggccgggtcgaggtgcccaaggagggcggcacggtcctg
caccccgtgtgcgaggacaccgcgaccctcgtctacctcgccgaccaggcctgcctgacc
ctgcaccgatggctcgcccgcgtctcgaccggcggcccggccgacgggacgtccggcgat
gcggccggtgatccgtccggcggtgcggtcgaccggcccgaccggctggtcttcgacctc
gaccccgccaccgacgacttcgagccggtacgcgacaccgcccggctcctcggtgaactc
ctcgaccaactcggcctgcccgccgccctgatgaccaccggctcgcgcggactgcacgtc
gtcgtagcgctcaacgggcgccacgacttcgacgaggtgcacaccttcgccaaggacgtc
gccgacacgctcgccgaggcacaccccgaccggctcaccacccaggcccgcaagaaggac
cgcggtgaccggctctatctggacatccagcgcaacgcctacgcccagaccacggtcgcc
cccttcaccgtccgcgccaggccgggcgccccggtcgccatgcccgtcacctgggagcaa
ctcgacgaaccggaactcggcccccgccgctggacgatcgccgacgcgctcgaccaggcc
cgcaccgaaccctggtcggggctgccgcgcggcgggcgcgcgctcgggcccgccagacgc
cggctggacgccctgcgcggctga
DBGET
integrated database retrieval system
