Streptomyces griseus: SGR_6690
Help
Entry
SGR_6690 CDS
T00691
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgr
Streptomyces griseus
Pathway
sgr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SGR_6690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgr03400
]
SGR_6690
Enzymes [BR:
sgr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SGR_6690
DNA repair and recombination proteins [BR:
sgr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SGR_6690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
BAG23519
Kitasato:
SGR6690
UniProt:
B1VMP4
LinkDB
All DBs
Position
7986066..7987028
Genome browser
AA seq
320 aa
AA seq
DB search
MARLPRIAPMLATPGRLPPPSEDTAYAYEVKQDGQRCVVYLPGDGSVQLRSRSGADITPA
YPELAGLGTALGSRPAVLDGEIVAPDEEGRGDFQRLQSRMGLAGSPARAARMAAKTPVHL
MLFDLVFLGTERLTRTPYSERRAVLESLELGGPAWSTPAAVVGHGRQALEMTRAAGFEGL
VAKRRTSLYEPGVRSRAWIKIRHVRTEDVVVGGWLPGHGRLTSLPGALLMGRPAPGGGLR
YVGGVGTGWSDDERTTLGALLHASATDTCPFTERPAVTGARWVEPRLVGEVRYATRTRAG
RLRQPSWHRLRPDLTPDDLR
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcggctgccccgcatcgcaccgatgctcgctacccccggccggctgccgccgccc
tccgaggacaccgcctacgcgtacgaggtgaagcaggacgggcagcggtgcgtggtctac
cttcccggcgacgggtccgtacaactgcgctcccggtccggcgccgacatcacccccgcc
tatcccgagctcgcgggcctgggaacggcgctgggctcccgccccgccgtgctggacggg
gagatcgtcgccccggacgaggaggggcgcggcgacttccagcggctccagtcccggatg
ggactggccggatctccggccagggcggcccgcatggccgcgaagacgcccgtgcacctg
atgctgttcgacctggtgttcctcggcacggaacggctcacccgcaccccgtactccgaa
cgccgcgccgtcctggagtccctggagctgggcgggcccgcgtggtcgaccccggcggcg
gtcgtcggccacgggcggcaggcgctggagatgacacgggccgccggcttcgagggcctc
gtcgccaagcgacgtacctccctctacgagcctggtgtccgctcccgggcgtggatcaag
atccggcacgtacggaccgaggacgtcgtcgtcggcggctggctgcccggccacggccgc
ctcacctcgctgcccggcgccctcctcatgggccgcccggcccccggcgggggactgcgc
tacgtcggcggcgtgggcaccggctggagcgacgacgaacgcaccaccctcggggccctc
ctccacgcctcggcgaccgacacctgcccgttcaccgagcggcccgcggtgaccggcgcc
cggtgggtggagccccggctggtgggagaggtccgctacgcgacccgcaccagggccgga
cggctgcgccagccctcctggcaccgcctgcgccccgacctcacccccgatgacctccgc
tga
DBGET
integrated database retrieval system
