Schistocerca gregaria (desert locust): 126293286
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Entry
126293286 CDS
T08688
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
sgre
Schistocerca gregaria (desert locust)
Pathway
sgre04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sgre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126293286
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgre00536
]
126293286
Glycosaminoglycan binding proteins [BR:
sgre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126293286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
126293286
NCBI-ProteinID:
XP_049842363
LinkDB
All DBs
Position
10:complement(127720600..127967452)
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AA seq
1659 aa
AA seq
DB search
MRAPPPLLLLALLVLAALAAGASRDAASRGRGRSSDRPRQRPAADAPARVARRRMLDRPQ
AQQPEEDEYENYDYGEYDLNGEDLDVENGDIDDVEVEATTPPPTPPPPPPTPRRPPPPPP
TPVAVPRFPPSPPPEPEPPATPPPPPPPPPRRQPVPATPPPTPPPVKEPPQPPSGIPSAS
RVEPVIPGNGGCLFEGSVYQDGEEWRADACSSCSCSRGRVECVLVSGCSKDDRCRDVICE
DLVCATQQYIPLGECCPVCADEPEPELTVQPTGGGREFGERPSLPQTHVETVPIPGPRGE
SGRPGEPGRPGEAGYPGPPGQPGIPGLPGPPGPAPDISPFYTQLALSQASGDKGPTGGGG
LGFGLSPDAYQYLHAQVGPVGPRGPPGPPGPPGPQGFQGVRGEPGDAGPVGPPGTPGPRG
LPGLPGKDGEQGDDGEAGQPGSAGPPGPRGLPGMPGLPGIKGHRGFPGLDGAKGEQGPSG
EKGAQGATGPMGPVGPMGPAGPRGERGREGPPGPPGLRGIDGISGPPGPPGAIGKPGPPG
FPGNPGAKGDLGHPGPKGSQGLQGPRGEAGRPGQPGESGVPGPPGKDGSAGEKGSPGTAG
LPGPPGFPGARGPPGLSGSPGQPGMKGSPGTPGERGFKGETGMKGESGAPGPRGLPGTAG
PEGKRGKRGIRGPTGPAGPQGERGVAGGRGLPGPDGAPGPKGQSGDRGPVGPQGTKGAQG
DPGRPGPPGLQGLRGSQGRTGPPGKPGNPGERGIQGADGKPGEPGPPGSQGLPGPIGPPG
DRGFAGEPGKDGEPGQPGTTGPRGDPGKDGAPGIQGPPGPPGSDGERGPPGPGGPRGFQG
LPGAAGNPGTPGKDGESGSPGPPGLPGPSGSRGDRGFPGERGPVGPPGPPGVRGETGQQG
SDGLPGPPGSKGDKGHSGASGLIGLPGLRGQPGAPGEKGERGSYGPPGPEGPPGRQGERG
PQGPVGQQGPPGEPADRGDPGPPGPPGEAGAPGGPGERGAPGPPGLQGFPGPLGPAGPPG
GKGERGFVGMKGEQGSAGQQGPPGEPGPQGLVGLTGPKGARGEPGIRGDNGIMGPPGRPG
EPGLAGSPGNIGPPGPPGLPGIKGAQGDSGRTGNPGPQGLPGAPGPEGPKGDTGSEGPSG
PPGQPGPQGPAGDRGLPGLPGPTGLAGARGPRGAPGDTGPPGKPGNEGPPGSPGILGPPG
PPGPAGEPGSEGPAGKAGPPGIAGRPGDKGPPGPLGSPGPSGAPGLPGPVGPTGPPGPAG
ERGPRGETGPQGVEGQQGLRGKPGAPGPEGAKGERGEEGPKGAKGHRGLIGLQGLPGPIG
PPGDKGMIGPPGPPGKDGETGTKGTPGRDGAPGPQGISGPPGPRGPPGEEGRHGPPGPPG
PPGPPGAPGESLGYDAAALAAILGQGAAGQNKGPDPLSGDEPARIFSKDISEESRRELVM
QAYEHLKRSFERFKKPDGEKSFPAKTCRDLFLAHPDKPSGDYWIDPNEGDVRDAILVYCN
ADTKATCVKPSPEKTPEVSYIGHEQEVWLSEIEGGIKMTYKADSNQLGFLQLLSVEAQQN
ITYHCLNSVAYFDSAKRTYRKGLKLLAWNDIEITPRGNQRVRYEVTDDDCRFKRPEWAQT
VISYSTDKPVRLPITDIGLRDIGQPDQKFWIEVGNVCFI
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccccgccgccgctgctgcttctggcgctgctggtgctggcggcgctggccgcc
ggcgcctcccgcgacgccgcctccagaggccgggggcgcagcagcgaccgcccgaggcag
cggcctgcggcagacgccccggccagggtcgcgcgccgccgcatgctggaccggccgcag
gcgcagcagccggaggaggacgagtacgagaactacgactacggcgagtacgatcttaac
ggggaagacctggatgtcgaaaacggcgacatagacgacgtggaggtggaggccacaacg
ccgccgccgacgccacctcctccgccgccgacgccgcgccgtccgcccccgccgcctccc
acgcctgtggcggtacctcggttcccaccgtcgcccccgccagagccggagccaccggcg
accccacccccgccaccacccccgcccccgcgacggcagcctgtaccagccactccacca
cccacgccgcctccggtcaaagagccgccgcagccgccgtctggtatcccctcagcctcc
agagtggagccagtcatcccggggaatggtgggtgcctctttgagggcagcgtgtatcag
gatggggaagagtggagggccgatgcttgctcgtcttgctcctgctcgcgcggtcgtgtc
gaatgtgtgctggtctccggatgctccaaagatgacaggtgcagagacgtcatttgtgaa
gatctggtgtgtgctacgcagcagtacattccactgggcgagtgctgtccagtctgtgca
gatgaacctgaaccagagctgacagtgcagccgactggaggtggaagggaatttggagaa
agacccagtttgccacagacccatgtcgaaacagttcctattcctggacccaggggagag
agtggacgaccaggagagccgggacgaccaggagaggcaggatatcccggaccaccggga
cagcccggaatcccgggactgccgggtccgccgggacccgctccggacatctcgccgttc
tacacccagctggctctctcgcaagcctctggtgacaagggccccactgggggtggtggc
ctaggattcggcttgtctccggatgcctaccagtaccttcacgcgcaagtcggaccggtc
ggaccgaggggcccaccaggaccaccagggccaccgggaccgcaaggtttccaaggtgta
cgaggggaacccggagatgcgggacccgtgggtcctccgggaactcctgggcccagagga
cttcctggattgcctggaaaggatggagagcaaggtgacgacggagaggcgggacagccc
ggctcggccggtcccccgggaccccggggtcttccgggcatgccgggtcttccgggcatc
aaaggacaccgcggattccccggactggacggagctaagggcgagcagggccccagtggc
gagaagggcgcacagggcgccactgggcccatgggacccgtcggcccgatgggtccagca
ggaccaagaggtgagagagggcgagagggtcctccgggacctcccggcctcagggggatc
gatggaatttccggaccaccaggccccccgggagccattggaaaacccggaccacctggg
ttccctggaaatcctggtgccaaaggagacctaggacatccaggtccgaaaggaagccaa
ggacttcaagggccaagaggagaggcaggccgtcctggacagccgggtgagtccggagtg
cctggaccgccagggaaggacggttcggcaggagagaagggcagcccagggacggcagga
ctccctggacctccaggcttccctggagcaagaggacctcccggactgtctggcagccct
ggacaacctggaatgaaagggagtccgggaacaccaggagagcgcggcttcaaaggagag
actgggatgaaaggagaatctggagcacccggacctcgtgggctgccaggaacagcggga
ccggaagggaagaggggcaagagaggaatccggggtcccacagggccagcgggacctcag
ggagagaggggagtggctggcggtcggggacttccaggacctgatggagcgccggggcct
aaaggtcaatctggagacaggggtcctgtaggtccacaaggaacaaagggagctcaagga
gatccaggaagacctggacctccaggtttgcagggtttgagaggaagtcagggacgcact
ggaccacctggtaagcctgggaatcctggagagagaggcattcagggagcagatgggaaa
cccggagagcctggaccacctggatcgcagggattgcccggccccattggaccacctgga
gatcgtggatttgcgggtgagcccggtaaggatggggaacctggccaaccaggaacaact
ggcccgagaggagaccccggaaaggatggcgctccaggaatccagggacctccaggacca
ccgggatctgatggagagaggggtccgccgggacctggtggtccacgaggcttccaggga
ctcccaggtgcagctggaaatcctggaactccagggaaggacggagagtctgggtcgccg
ggtcctcccggacttcccggaccttccggatctagaggggaccgcggattccccggagag
cgcggtcctgtaggacctccgggacctccaggagtacggggcgagacgggccagcaggga
tctgacggccttccgggaccaccaggatctaagggtgacaaaggacattctggtgccagt
ggattgattggtctgccaggactgcgaggacagccaggagctcctggagagaagggcgag
aggggctcgtacggaccaccgggacccgagggaccaccaggtcggcagggagagagggga
ccgcagggtcccgtgggacagcaggggccgcccggggagccggcggacaggggagacccc
ggaccaccgggacccccgggtgaggcgggagctccgggaggacccggtgagcggggagca
cccggaccacctggcctgcagggtttcccgggccctctgggtccggcgggaccgccggga
ggcaagggagagcgtggcttcgtgggcatgaagggtgagcagggcagcgctggtcagcaa
ggtccaccgggagagccaggaccgcagggtctggtaggtctgacggggccgaagggagct
cgcggtgaacccggcatacgcggtgacaacggcatcatgggaccgcccggcagacccggc
gagccaggactggctggttcaccaggaaacatcggacctccaggtcctccaggacttcca
ggaatcaagggtgcccagggagacagtggaagaacaggaaatccggggccacagggattg
ccgggagctcccggtccggaaggtccaaaaggagacacaggttcggagggtccatccgga
ccaccagggcagcctgggccgcagggtcctgcgggagacagagggcttcccggacttccg
ggacccacgggacttgcgggtgcccggggaccgaggggtgcaccgggtgacactggacca
ccgggaaaacccggcaacgaaggaccgcccggatctcctggaattttgggaccacctgga
ccacctggtccggctggagaacctggaagtgaaggacctgcaggcaaagctggaccacct
ggaatagcgggacggccgggagacaagggacctccgggacccctcggttcccctggaccc
agcggtgctccgggtctgcctgggccagttggacctaccggaccaccaggacccgccgga
gagagaggtccgaggggagagaccggaccacagggtgtcgaaggacagcagggtctaaga
ggaaaacctggtgctcctggaccagagggtgccaagggagagagaggagaagagggacca
aagggtgccaagggccaccgaggactcatcgggctgcagggactgcccggacccattggc
ccccctggagacaagggaatgattgggcctcccggaccaccaggaaaggatggagaaact
ggaaccaaagggacacccggaagggatggagctccagggccgcagggtatttccggacct
cccgggcccaggggtccccctggagaagagggtcgtcacggaccgccgggacctcccggg
ccgcccggacctccgggagctcctggggagtctctgggttatgacgccgccgctctggct
gccatcctgggacagggagccgccgggcagaacaagggccctgacccactgagcggtgat
gagccggctcgaatcttcagcaaggacatcagtgaagagtcacgtcgcgagttggtgatg
caagcctacgaacacctgaagaggtcattcgagcgcttcaagaaaccagatggagagaag
tcgttcccggcaaaaacgtgcagggatctcttcctcgcacatccagataagcctagtggt
gactactggatagatcctaatgagggtgacgtgagagatgccatcttagtgtactgcaat
gccgacacgaaagcgacatgtgtcaaaccgagtccggagaagacaccagaagtgtcatac
ataggacatgaacaggaggtgtggctcagtgagattgagggaggcataaagatgacgtac
aaggcggacagcaaccagctgggattcctgcagctgctgtcggtggaggcgcagcagaac
atcacctaccactgtctcaactcggttgcgtacttcgactcggccaagaggacctaccgc
aagggcctcaagctgctcgcctggaacgacatagagattaccccgcggggcaaccagagg
gtgcgctacgaggtcaccgatgacgactgtcggttcaagagacccgagtgggcccagacg
gtgatcagctattcgacagacaagccagtgagactgcccatcacggatatcggcctccgt
gacatcggccagccggaccagaagttctggatcgaagttggcaatgtgtgtttcatctga
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integrated database retrieval system
