Streptomyces graminofaciens: SGFS_034410
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Entry
SGFS_034410 CDS
T09325
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sgrf
Streptomyces graminofaciens
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgrf03016
]
SGFS_034410
Enzymes [BR:
sgrf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SGFS_034410
Transfer RNA biogenesis [BR:
sgrf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SGFS_034410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
BBC32147
LinkDB
All DBs
Position
3898921..3900225
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AA seq
434 aa
AA seq
DB search
MTDAQETAADSTLRTTGGAPPDDGGSSEAGAPIPLLEPRDGIPPVIADEAALAEVIAAFA
AGSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVACPDLSGLGEALSGAEWVLH
AATQDLPCLREIDMVPTVIFDTELAGRLAGFPRVGLGAMVESVLGYVLEKGHSAVDWSTR
PLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWARQEFDAIASAPPPEPRKDPWRRT
SGMHKVRRRRQMGVVRELWEARDRIARRRDVSPGKVLSDTAIVEASLALPANVHALAALN
GFGHRMGRRQLEQWQAAVDRAKALPDSALPAQGQPVTGPPPPKAWADKDPAAAARLSAAR
AAVSALAEQLNMPQENLITPDTVRRLCWEPPVTADAESISGALAGYGARPWQVEQVTPVL
VGALSTKAKGAQSP
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccaagagaccgcagcagacagcaccctgcgaaccaccggaggcgcccct
ccggacgacggcggatcttctgaagcgggggcgccgatccctttgctggagccgcgagac
ggtattccgcccgtgatcgccgacgaggccgcgctcgccgaggtgatcgccgccttcgcc
gccggctccggccccgtcgccgtcgacgccgaacgcgcgtccggataccgctacggccag
cgcgcctatctggtgcagctgcgccgcgagggcgcgggcaccgcgctcatcgaccccgtc
gcctgcccggatctctccggcctcggagaggcgctctccggagcggagtgggtgctccac
gcggccacccaggacctgccctgtctgcgcgagatagacatggtcccgaccgtcatcttc
gacaccgagctggccggccggctcgccgggttcccccgcgtcggcctcggcgcgatggtc
gagagcgtcctcggctacgtcctcgagaagggccactccgccgtcgactggtccacccgc
ccgctccccgagccgtggctgcgctacgccgccctcgacgtggagcttctcgtcgatctg
cgggacgccctggagaaggagctggagcggcagggcaagctggagtgggcccggcaggag
ttcgacgcgatcgcctcggcgccgccgccggagccccgtaaggatccctggcgtcgtacg
tccgggatgcacaaggtacggcggcgtcggcagatgggcgtcgtacgggagctgtgggag
gcccgggaccggatcgctcggcggcgggacgtctcgccgggcaaggtgctcagtgacacg
gcgatcgtcgaggcgtcgttggctctgccggccaatgtgcatgccctcgccgcgctgaac
gggttcgggcatcggatggggcggcggcagctggagcagtggcaggcggccgtcgatcgg
gccaaggcgttgcccgactccgcgcttcccgcgcaggggcagcccgtcacggggcctccg
ccgccgaaggcttgggccgacaaggatccggctgcggctgctcggctgtccgcggcgcgg
gccgccgtgagcgcgctcgccgagcagctcaacatgcctcaggagaacctgatcaccccc
gataccgtgcggcggctctgctgggagccgccggtcacggctgacgccgagtcgatctcc
ggcgcgctggccgggtacggtgctcggccctggcaggtggagcaggtgactccggtgttg
gtgggggcgctgtccaccaaggccaagggtgcccagtcgccgtag
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