Streptomyces graminofaciens: SGFS_039600
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Entry
SGFS_039600 CDS
T09325
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SGFS_039600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgrf03400
]
SGFS_039600
Enzymes [BR:
sgrf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SGFS_039600
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SGFS_039600
DNA repair and recombination proteins [BR:
sgrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SGFS_039600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BBC32666
LinkDB
All DBs
Position
complement(4556496..4557356)
Genome browser
AA seq
286 aa
AA seq
DB search
MPELPEVEVVRRGLERWVAHRTVADVEVLHPRAIRRHLAGPDDFAHRLKGHRIGEPSRRG
KYLWLPVEDTGIAVLAHLGMSGQLLVQPQDAADEKHLRIRVRFADDLGTELRFVDQRTFG
GLSLHDTTPDGLPDVIAHIARDPLDPLFDDEAFHQALRRKRTTIKRALLDQSLISGVGNI
YADEALWRSRVHYERPTAGFTRPRTAELLGHVRDVMNAALAVGGTSFDSLYVNVNGESGY
FDRSLDAYGREGLPCRRCATPMRRRPWMNRSSYYCPKCQRAPRASS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaacttcccgaggtcgaggtcgtacgacgtggccttgagcgctgggtggcgcac
cggaccgtcgccgacgtcgaggtgctgcacccgcgcgcgatccggcggcatctcgccggc
cccgacgacttcgcgcaccggctcaaggggcaccggatcggggagccgagccggcgcggg
aagtacctgtggctgcccgtggaggacaccggcatcgcggtcctcgcccacctcggcatg
agcggccagctgctggtccagccgcaggacgcggccgacgagaagcacctgcggatccgc
gtacggttcgccgacgacctcggcaccgaactgcggttcgtggaccaacgcaccttcggc
gggctctcgttgcacgacaccacccccgacggactgcccgacgtcatcgcgcacatcgcc
cgtgaccccctcgacccgctcttcgacgacgaggccttccaccaggcgctgcgccggaag
cgcacgaccatcaaacgggccctgctcgaccagtcgttgatcagcggtgtcggcaacatc
tacgccgacgaggcgctctggcgctcacgcgtccactacgaacgccccaccgccgggttc
acccgcccgcgcacggccgaactcctgggccatgtacgagacgtcatgaacgccgccctc
gccgtgggcggcacgagcttcgacagtctctacgtcaacgtcaacggcgaatcggggtac
ttcgaccggtcgctcgacgcgtacggacgggaggggctgccctgccggcgctgtgccacg
ccgatgcggcggcggccctggatgaaccggtccagctactactgcccgaagtgtcagcgg
gcgccgcgggcctcgtcgtaa
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