Streptomyces glaucescens: SGLAU_22865
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Entry
SGLAU_22865 CDS
T03327
Name
(GenBank) DNA polymerase LigD, polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgu
Streptomyces glaucescens
Pathway
sgu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SGLAU_22865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgu03400
]
SGLAU_22865
Enzymes [BR:
sgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SGLAU_22865
DNA repair and recombination proteins [BR:
sgu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SGLAU_22865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AIS00523
UniProt:
A0A089X998
LinkDB
All DBs
Position
complement(5182463..5183335)
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AA seq
290 aa
AA seq
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MTVVEGRKLALSNLEKVLYPASGFTKGEMLHYYATAAEVLLPHLRDRPVSFLRYPDGPDG
QLFFTKNVPPGTPDWVMTAEVPRSEGPARMVLVQDLPSLMWAANQVAEFHTHQWLAGSPE
EADRIVFDLDPGPPATVVHCCEVALWLRERLAADGIEAYAKTSGSKGLHLLAAVRGAPSE
RTSEYAKALAVEAERAMPRLVVHRMTRSLRPGKVFVDWSQNAARKTTATPYTLRARAEPW
VSAPVTWEEVEACGDPAQLAFRAPDIAPRVQDYGDLLAPLLDPERVAALP
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtggtggagggccggaagctcgcgctgagcaacctggagaaggtgctgtacccg
gcgtccgggttcacgaagggcgagatgctgcactactacgccaccgccgccgaggtcctg
ctcccccatctgcgggaccggccggtgtccttcctgcggtatccggacgggcccgacggg
cagctcttcttcaccaagaacgtgccgccgggtacgcccgactgggtcatgaccgccgag
gtgccccgctccgagggtccggcgcggatggtgctggtgcaggacctgccgagcctcatg
tgggcggcgaaccaggtcgccgagttccacacccaccagtggctcgcgggcagccccgag
gaggccgaccggatcgtcttcgacctggacccgggtccgccggcgaccgtcgtgcactgc
tgcgaggtcgccctgtggctgcgggagcggctggccgcggacgggatcgaggcgtacgcc
aagacgtcgggctccaaggggctgcacctgctggcggcggtgcggggagcgccctccgag
cggacgtccgagtacgccaaggcgctcgccgtcgaggcggagcgggcgatgccccggctg
gtcgtgcaccgcatgacgcggagtctgcgcccgggcaaggtgttcgtcgactggagccag
aacgccgcccgcaagacgacggcgaccccgtacaccctgcgggcgcgcgccgagccgtgg
gtgtccgcccccgtgacctgggaggaggtcgaggcgtgcggcgatccggcgcagctcgcg
ttccgggcgcccgacatcgccccgcgcgtgcaggactacggcgacctgctggccccgctg
ctggatccggagcgggtggccgcgctgccgtga
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