Syntrophobotulus glycolicus: Sgly_0962
Help
Entry
Sgly_0962 CDS
T01429
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgy
Syntrophobotulus glycolicus
Pathway
sgy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Sgly_0962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgy03400
]
Sgly_0962
Enzymes [BR:
sgy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Sgly_0962
DNA repair and recombination proteins [BR:
sgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Sgly_0962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ADY55303
UniProt:
F0T2I5
LinkDB
All DBs
Position
948890..951331
Genome browser
AA seq
813 aa
AA seq
DB search
MDRKLNDYNEKRNFARTTEPEGAREMAREGLRFVVQHHLARRDHYDFRLEWDGALLSWAV
PKGPSYNTRDKRLAVQVEDHPLEYRNFEGTIPKGEYGGGVVMLWDEGYWEPDGNVDDGLR
AGMLKFVLKGRRLKGKWALVRLKKKAGETKDNWLLLKEKDQYAKTGDEVSQFATSIRTGR
TMKEIEEGEDEKITPNPFGSTGVQLAKLVRMVPEGEDWLYELKYDGYRIVAYMEGGSARL
LTRNGRDYTARFPDVASSLSDWAGGRAMILDGEMAVTDAAGRTDFQALQNYLNNAQAQSL
TYIIFDLLALDGADLRGHRLLDRKGTLEALLKDAPENLYYSRHVSGNGRESFAAACAAGL
EGIIGKKADSLYSGTRNGDWIKLKCEQRQEFVIGGYTLSAKKTSGVSSLLLGVYEGQGLV
YAGRAGTGLSEAGRRELAEKFAGRERTEPPFRLPPKARANEKITWLEPELVAEIKFAEWT
KDDLLRQASFKGLRTDKKPEEIKREKTDGERQPPPSAKETERAMEANTNSIMIEGIKITN
PDKVIFTDPETTKGDVVRYYAQVAERMLPYVSRRVLSIVRCPKGIAQTCFYKKHPGPGSK
GIVTIPVTNSDGETEEYFYIENTSGLIAEAQMGTLEFHTWGSRADELEKPDLMVFDLDPD
EGMDLSRVRQGVRDMKDLLTELSLRAYLKTSGGKGYHVVVPLKPSVSWDRFYDFARRVAE
VMEQKWPDRYTSNVRKAKRAGKIFIDWMRNGRGATSIAPYSLRAREGTRVSMPIAWEELD
TVAPDSVNMAEALRRIGGNDPWQGFFRNGQQLK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggatagaaagctgaacgactacaacgaaaaaaggaattttgccaggaccacggaaccg
gaaggggcaagagaaatggcccgggaaggcttaaggtttgtcgtccagcaccatctggcc
cgcagggatcactatgatttccgcctggaatgggacggagctctcttgagctgggccgtg
cccaagggaccttcctataatacccgggataagaggctggccgtccaggtggaggaccat
cccctggaatacaggaactttgaggggacgattcccaaaggggaatatggcggcggagtc
gtcatgctctgggatgaagggtactgggaaccggatgggaatgtggacgacgggctccgc
gcagggatgctgaagtttgtgctcaaaggacggaggctgaagggaaagtgggctttggtg
cgcttgaaaaagaaagcgggcgagaccaaggataactggctgctgctgaaagaaaaagat
cagtatgccaaaaccggcgacgaggtttcccagtttgccaccagcatcagaaccggacgc
accatgaaggaaatcgaagaaggggaggacgaaaagatcaccccaaaccccttcggcagt
accggcgtgcagctggccaaattagtgcggatggttcctgaaggggaggattggctctat
gagctgaaatacgacggctacaggatagtggcgtatatggagggcggcagcgcccgcctt
ctgaccaggaatggccgggattatacggcgcggtttccggatgtcgcctcttcccttagc
gattgggccggaggaagggccatgattctggacggcgaaatggccgtcacggatgcagcg
ggcaggacagattttcaggcgctccagaactatctgaacaatgctcaggcccaaagcctg
acctatatcatctttgatctcctggccctggatggggcggacctccggggacaccgcctg
cttgaccggaagggaaccctggaagcgttgctgaaggatgcccctgaaaacctctactac
agccggcatgtgagcggaaacggcagggaaagcttcgctgcggcctgtgccgcaggtctg
gaaggaatcatcggcaaaaaagcggattccctctacagcggaaccagaaacggggactgg
atcaagctgaaatgcgagcaacggcaggaatttgtgatcgggggctataccctttccgcg
aaaaagacgagcggggtcagctccctgctcctgggggtttacgaaggtcagggattggtc
tatgccggccgggccggcacgggcttaagtgaagcgggccggagagagcttgcggaaaaa
tttgcgggcagagagagaacggagcctcctttccggcttccgcccaaggccagggcaaac
gagaaaatcacctggctggagcctgagctggtcgcggaaatcaaatttgccgaatggacc
aaggatgatctgttaaggcaggccagcttcaaaggcctgcggacggacaagaagcctgag
gagatcaaaagggaaaaaacggatggggaaagacagcccccgccgtccgccaaagaaacg
gagagagccatggaagcaaacaccaacagcatcatgatcgaaggaatcaagatcacaaat
ccggacaaggtaatctttaccgaccctgaaaccaccaaaggggatgtggtccggtactac
gcccaggtggcggagcgcatgctgccttatgtgagccgcagggtgctcagcatcgtccgc
tgccctaagggcatcgcccagacctgcttttataaaaagcatcccggccccggcagcaag
ggaatcgtcaccatcccggtcaccaacagcgacggagaaaccgaggaatatttttatata
gagaacacctccggactgattgctgaagcccaaatgggcaccctggaatttcatacctgg
ggaagccgggcggacgagctggaaaagcctgatctgatggtttttgatctggacccggat
gaaggaatggatctgagcagggtgcgccagggtgtgcgggatatgaaagatcttctcacc
gagctttccttgcgggcctacctgaaaaccagcggcggcaaggggtatcatgtggtcgtc
ccgctaaagccctctgtttcctgggaccggttttacgattttgccaggcgggttgccgaa
gtgatggagcagaaatggcctgaccgttacaccagcaatgtgagaaaggccaagcgcgcg
ggcaagatctttatcgactggatgcgcaacggcagaggggcgaccagtattgccccctat
tccctgagagcgagggaagggaccagagtgtccatgcccattgcctgggaggagctggat
acggtggctccggacagtgtcaatatggcggaggcgctgcggcggatcggcggcaatgac
ccctggcagggtttcttccggaacgggcagcagctgaaatga
DBGET
integrated database retrieval system
