Strigops habroptila (Kakapo): 115604603
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Entry
115604603 CDS
T08851
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04510
Focal adhesion
shab04512
ECM-receptor interaction
shab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115604603 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115604603 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115604603 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shab04147
]
115604603 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
shab00536
]
115604603 (COL4A1)
Exosome [BR:
shab04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115604603 (COL4A1)
Glycosaminoglycan binding proteins [BR:
shab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115604603 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115604603
NCBI-ProteinID:
XP_030333765
LinkDB
All DBs
Position
2:64265545..64390031
Genome browser
AA seq
1669 aa
AA seq
DB search
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGTKGDPGEVIGLLPPSLLKGDKGFPGQPGLPGPAGTP
GFQGPMGPQGLPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIRGEKGDPGEKGEQGVPGLPGSGFKGEKGEPGKPGPRGKPGKDGEPGPKGEAGL
PGGFGIPGRPGEPGAKGDKGERGFPGPPGRIIDTGPVDRFGEKGEPGLSGLPGLKGQKGE
KGFPGIQGIPGPPGRPLPDRVGSPGVPGERGEKGEKGSPGFALPGPPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGESCALCDKVGPPGLPG
PQGPPGPAGFPGQSGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFSYDSILK
GEKGDPGFPGQPGVPGREGIPGKDGLPGLQGPKGAPGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGTAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVTLPGPPGADGLPGPPGFP
GPQGDKGDPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLQGPPGAPGLGLQGSPGPAGQPGPQGPPGFPGIKGERGFPGIPGLDMPG
PKGDKGSPGQPGVPGSVGLPGLPGPQGAIGLKGSAGAKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSQGFKGVVGPQGDPGVKGDKGEAGLPGKPGTMDTMDMVSLKGQKGDQGEKGDHG
ATGEKGLRGEYGEPGIPGKDGEPGTPGQPGPKGDQGPPGFPGDPGVPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGIAGFPGSPGRHGDKGEKGLPGLSGIPGLKGEPGEPGL
PGPAGSIGQKGEPGYDGIPGAAGAKGEQGVPGRGLPGFPGAKGDKGAKGDVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGSQGFPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPG
LKGAKGEQGSNGWPGTPGGPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPKG
SPGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGRPGQKGEAGPYGPPGPRGFPGPPGPEGLPGAMGPPGAP
SVAHGFLVTRHSQTTEEPACPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtctgcc
gcgggttgttccggctgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaaggggccccccaggagtatcaggcttcccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccgcctggcattccaggatgtaatggcacaaagggt
gaaagaggtcctgtaggtcccccaggtttaccagggctgactgggagcataggaccccca
ggacctcctggaacgaagggagatccaggcgaagtgattggtcttttacctcctagtctg
ctaaaaggtgataaaggctttcctggacaacctggactacctggtcctgctggaactcca
gggtttcagggaccaatggggccacaagggctgccaggagagccaggtcccccagggcca
ccaggactcccaggcgagaagggctatatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggggtaagaggccccccaggccctccaggaccagcaccacatatgaaa
gaaaaagggagtgaaatcataagaggagaaaagggtgatccaggtgaaaagggtgaacag
ggagttccaggactgccaggttcaggtttcaaaggagaaaagggtgaacctgggaagcct
ggtccacgtggaaagccaggaaaagatggtgagccaggacctaaaggagaagctggtttg
cctggtgggtttgggattccaggacgacctggggaacctggtgccaagggtgacaaaggt
gaacgaggttttccagggcctccaggaagaattatagatactggaccagtagataggttt
ggtgaaaaaggagagcctggactttcaggtttgcctggactgaaaggtcaaaaaggtgaa
aaaggtttccctggtatacaaggaatcccaggtcctccaggtcgaccactgccagacagg
gtagggtcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccagga
tttgctttgcccggacccccaggaagagatggtttcccaggtcccccggggttgcctggg
ccaccaggtcctccaggcaaaacagatggaatcgatcaatgccagcagggggaacctggt
gcaccaggtagtcctggacttccaggaagagatggatttccaggagagatgggagagaaa
ggtgacaaaggtgaatcctgtgccttatgtgataaagtaggacctcctggacttccagga
ccgcaaggaccaccaggtccagcaggttttccaggacaatcgggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggggtacctggcccccccggcactccaggactt
atgggcagccctggggcaaaaggagaaccaggagatttttcttatgattctatcctgaaa
ggtgaaaagggagatcctggttttccaggacaaccaggtgttcctggaagagaaggaata
ccaggaaaagatggattgccaggtctccagggtccgaaaggagcgccgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtacgtggtgaaaga
ggttttcctggccctcctgggataggtactgcagggttacctggtgacaaaggagacaga
ggctttgctggaaccccaggtttaccaggccttccaggagcaaagggcgaagcaggacga
acggtaacgctccccggacctcctggggcagatgggcttcctgggccacctggtttccct
ggaccccaaggtgacaaaggggatcctgggcttccaggtagacccggcctgccaggagaa
aaaggtgctgttgggcagccaggtatagggttccctgggcctccaggacccaaaggtttc
caaggtcagcctggctcgcctggtcttccggggactccgggaacccctggcctggatggc
ttgccaggtgtaccaggtttacaaggtcaaaaaggcgaacctggtgtaggtctccctggc
cctaagggattgccaggccccccaggcccagctggcatccctggagaaaagggaagtcca
ggactgcctggtttacgtggtgagcaaggctttccaggcatacctggacagcaaggattc
agaggtgaccctggcctcccaggactgcaaggcttgcagggccctccgggcgcaccgggg
ctgggcctgcaggggtcaccgggacccgccgggcagccaggaccacagggaccgccagga
tttcctggaataaaaggagaaaggggcttccccggtatcccaggtctagatatgccagga
ccaaaaggggataaaggtagccctggccagcccggagtgccaggctctgtggggttaccc
ggcctgccaggtccacagggggccattggactgaaaggatcggcaggagccaaaggagaa
atgggagttatgggaactcctggattgccaggaactcctggaccagttggagatcgaggg
ttgcctggtgaaaaaggtagccaaggtttcaaaggtgtagttggaccacagggtgatcct
ggtgtcaaaggagacaaaggtgaagccggtctcccgggcaaacctggaacaatggacacc
atggatatggttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagaaaaaggattacgtggggaatatggagaaccaggaattccagggaaggat
ggtgaacctggtactccgggacagccaggaccaaaaggtgatcagggccccccaggattt
ccaggggatccaggagttccaggacaaaaaggatcggttggtgaaatgggtttgccagga
acacctggagaaaagggtctgccaggagtaccaggttcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
gggtctcctggtgaaaagggagaaccaggaagaacgggtagtccaggtttatctggagat
aagggtgaaaagggtagtgcaggaattcctggaatgccgggtgctccaggtcccaaagga
tcccctggcatcgcaggatttccaggaagccccggccgccatggagacaagggtgaaaaa
ggacttcctggtttaagtggcattccaggtttaaaaggagaaccaggtgaacctggcctt
ccgggtcctgctggttccattggacagaagggtgaaccaggttacgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtgttccaggtagaggacttccaggatttcccggt
gcaaagggagataaaggtgcaaaaggtgatgtgggctttccaggatccccaggaagtccg
gggatcccaggcctgaaaggagaaccaggatatgcaggtccaccaggccctaagggcagc
caaggttttcctggactaccaggaagtgcaattgagggccctaaaggagacagaggaccc
caaggccaacctggccttccaggtttaccaggtccaacagggccaccaggacccccaggt
ctgaaaggggccaaaggagagcagggaagcaatggctggcctgggactcctgggggtcca
ggagtcaaaggtgatccgggtttccagggactgccaggtagtcctggtttaccaggagat
attggtcaaaagggtgatctgggacctccgggagttccaggtgttccaggtccaaaagga
tctcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggtccaccaggcccaccaggtgcgtttcagcttgttaaaggtgatcctggt
ttacctggccctgtaggaccagttggtctcaaaggattcccaggacttccaggacccaaa
ggacagcaaggggtgacaggaccttcaggtgtacccggaccacctggtagcccagggttt
gatggtagacctgggcaaaaaggagaagctggtccctatggtcccccagggcccagagga
ttccctggtccacctggccctgaaggtttgcctggggctatgggcccaccaggtgcacca
tctgttgctcatggcttccttgttaccagacacagtcaaaccactgaagaaccagcgtgt
ccatttggaacaaggctgatttaccatggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacggcgggaagctgtcttcgtaaatttagtaccatg
cctttcttattctgcaatatcaacaacgtatgtaactttgcatcaaggaatgactattcc
tactggctgtccactcctgaacccatgccaatgagtatggctcctatcactggtgataat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
cacagtcaaacaattcaaataccgccatgtcctgaaggctggagttcgctttggattggt
tactcctttgtcatgcacaccagtgctggtgcggagggctctggccaggccctggcgtct
cctggttcctgcctagaggagtttcgcagcgctcctttcattgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagaaaggaatgag
atgttcaagaaaccgactccctcaactttgaaagcaggggatctgcgctcaaacgttagc
cgttgtcaagtctgtatgagaaaaacataa
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integrated database retrieval system
