Strigops habroptila (Kakapo): 115615347
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Entry
115615347 CDS
T08851
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
shab
Strigops habroptila (Kakapo)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
CBM_4_9
DUF4998
Motif
Other DBs
NCBI-GeneID:
115615347
NCBI-ProteinID:
XP_030359289
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Position
13:14097701..14146088
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AA seq
1473 aa
AA seq
DB search
MLIHTCFFLACLPVVSHVWGHAGQGSGRLKLTVLSEDRLQMKWKETEGNISGYKVRVKPM
AGDSEQEVMLKTKTPKATVGGLSPTKEYTLQVYVLNGSQEALFAKRKFVIEELKNASQTR
NNRRNSAAASGKNLTSLGNPEAEHSGVAEATPPPLNTVLTQPAKDRTEKKRQKGIQPKGL
GETTRNQPGVEASVTGATPTTTKSSQHTPASPEREPLGKEKPTKDSLRRGSQFQCDTSAM
TDIVLLVDGSWSIGRNNFKLIKEFLSNLISPFSIGQDKIRVGLSQYSSDPRTEWDLSAYS
TRDQVLEAVRSLRYKGGNTFTGLALTHVLEQNLKPGAGARLEAEKLVILLTDGKSQDDAN
LAAQTLKNLGIEIFAIGVKNADEAELRQVASEPLELTVYNVLDFPLLSSLVGKLTRVLCT
RIREKSNRENTGSAVKESPVNSGPQLSPTDLKISAVTSKSMHLTWNPPPRPPKKYRVVYY
PSKGGVPREVILDGAVSSLQLSNLTSHTEYLVSVIPVYDTVVGDGLRGVTSTLPLSSPRS
LRVSELSHNSMRLSWKAAQGATQYLVLCSAAPDGAEDYTMEVKVSQPEVLLDGLSPSTEY
SIAVYAMYGEDASDPASIQETTLALSPPRYLSFSELSHASVRVSWEAASPAVKAHHVSYV
SSRGSNAGEVEVPGTATSTVLRPLSSLTQYFISVRSTYDEGDSFPITGNVTTLKVPPPRA
LKVTELSGNSLRLQWEAVAASDVVVYQIKWSTASGEKPQELSIAGNVATAVLPGLQKNTD
YKISMWAYYKDGARSDTVSVQHRTNSRSPPSNLFIDSETPTSLQFHWTPPDGRVQHYKIT
YHPVSDAGAQQTIMASGKSSSVTLQPLLPDRAYKVIISAIHYTGESEITSTTGRTAPVLS
KFPSIRGFIPSKTEACPTISSTKGSIRGFDMMEAFGLVEKEYASVKGVAMEPFIFSGSRT
FTLFRDTQLTQRTSDIHLFAIPPEHTISFLLRLLPETPKEPFAVWQITDEDFQPLLGVNL
DPSKKSLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHVAVSHFKIKLYLDCKKIAEK
PINTVGSISTAGFIMLGKVTRTRGPRSGSASFQLQSLQITCSSTGAEEDRCCDLPALRDE
ETCPSLAPACSCSSGRPGLPGPPGPPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPEGPSG
QQGSPGSQGITVQGPVGPPGIKGEKGDTGSPGLQGIPGVQGAPGRDGLQGAKGVRGLEGT
AGPPGPPGPRGFQGVTGSRGSSGEKGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVS
QACERMIQTHVLKFDSFIHEHARKPVPIWEERLKPGEPGPPGPPGPPGSNGERGESGIPG
QPGKDGYPGERGAPGPKGEKGMSGASEEGIQGPRGRTGPPGEVVLGKPGPKGYPGNVGPQ
GFPGVRGQPGQSGYPGGCDISGCYGAERRDFIP
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcacacttgtttctttcttgcctgcctgcctgtggtgagccatgtctggggt
catgcaggacaagggtcaggccggctgaaactcactgtcctttcagaagacaggctccag
atgaaatggaaagagactgaagggaacatcagtggctacaaagttcgggtaaagcccatg
gcaggggactcggagcaagaagtcatgctgaaaaccaagactcccaaagccacagtgggg
gggctgagccctaccaaggaatacacgctgcaggtctacgtgctcaacggctcccaggaa
gccctgtttgccaagaggaaatttgtgatagaggaactcaaaaatgcatcccagactaga
aataaccgaaggaactcggcagctgcatcaggaaagaacctcacctctttggggaaccca
gaagctgagcacagtggggtggcagaggccaccccaccacccctgaacaccgtcttgaca
cagccagcaaaggacagaactgagaagaaaaggcagaaggggattcagccaaagggcttg
ggagaaacaacaagaaaccagcctggtgtggaggccagtgtgacgggagcaacaccaacc
actacaaagtcatcccagcacactcctgcaagcccagagcgcgagcctctagggaaagaa
aaacccacaaaggattcattgaggagaggttcccagtttcagtgcgacacatctgcaatg
actgatatcgtcctgcttgtggatggatcctggagcatcggccgcaacaatttcaagctc
attaaggagtttctgagcaatttgatttccccattcagtattggccaagacaagataaga
gtagggctgtcccagtacagcagtgatccccgcacagagtgggatctgagtgcttactct
acaagggaccaggttctggaggctgtgaggagtttgcggtacaaaggaggcaacaccttt
acaggtctggcactgacccacgtcctagagcagaatctgaaaccaggtgctggtgcccgg
ctagaggctgaaaagttggtgatactcctgactgatggaaaatcccaggatgatgccaac
ctggctgctcagaccttgaaaaacctgggcatagagatatttgctattggggtgaagaac
gcggatgaggcagagctgaggcaagtggcatcggagccgctggagctcaccgtgtacaac
gtgctggacttcccgctgctgagctcgctggttggcaaactcacccgggtcctgtgcacc
aggatcagagagaagagcaacagggaaaacacaggcagcgctgtgaaagagagccccgtg
aactcgggtccccagctgagcccaactgacctgaaaatatcagctgtgacctctaagagc
atgcatttgacctggaatcctcctccaagaccaccaaagaaataccgagttgtgtattat
ccttctaagggtggtgtccccagagaggtgattttagatggagcagtctcctctttgcag
ctttccaatctgacctcgcacacggagtatctggtgtcggtgattcctgtttatgacaca
gttgttggggatgggctgagaggcgtcacctccacattgcctttgtcttcccctcgctcc
ctgcgtgtctctgagctgagccacaacagtatgaggctgagctggaaggcagcccaggga
gccacgcagtacctggtgctctgctccgcagcccctgatggggcagaggactatacaatg
gaggtgaaggtgtcccagcctgaggtcctgttggatgggctgtctcccagcacagagtac
tccatcgcagtgtatgcaatgtatggggaggatgcgagtgatccagccagcatccaggaa
accaccctggccttgagtcctcccagatacctgagcttctcggagctgagccatgcgtcc
gttcgggtcagttgggaggctgcgtctccggctgtgaaagctcaccatgtcagctatgtt
tctagcagaggaagcaatgctggggaggtcgaggttcctggcaccgcaacatccactgtc
ctgagacctttgtcctccctcacccaatacttcatcagtgtcagatctacatatgatgaa
ggggactcctttccaattactggcaatgttaccactttaaaggtcccccctccgcgggcg
ctgaaggttactgagctctccgggaacagcctccgactgcagtgggaagctgttgctgcc
tccgatgtggttgtctatcagatcaaatggagcacggccagtggcgagaagcctcaggag
ctctccatcgctggaaatgtggcaactgctgtcctgccaggcttgcagaagaacaccgac
tataaaatatccatgtgggcctattacaaagatggtgctcgaagcgacaccgtttctgtt
cagcacaggaccaattcccggagcccacccagcaacctcttcattgactctgagaccccc
actagcctccagttccactggaccccccctgacggccgtgtacagcactacaaaatcacc
tatcaccctgtgtctgatgctggtgctcagcaaacaatcatggcttctggcaaaagcagc
agtgtgaccctgcagccactactgcctgatcgagcctacaaggtgatcatttctgccatc
cactacacaggagagagtgagatcacatccacaacgggacggacagctcctgtgttgtct
aaattcccttcaatacgaggattcattccatctaaaacagaggcctgccccaccatcagc
tctaccaaaggctccatacgaggatttgatatgatggaagcttttggcttagtagagaag
gaatatgcctctgttaaaggtgtagctatggagccattcatattcagtggctcccgtacc
ttcaccctgttcagagacactcagctcacccagaggaccagtgacatccacctctttgcc
atcccacccgagcacaccatcagcttcctcctgcgcctcctgcccgagacccccaaggag
ccttttgctgtgtggcaaataacagatgaggacttccagcctctccttggtgttaacctt
gaccccagtaagaaatccttgacctatttcaaccatgactacaaggctgatctacaggaa
gtctcctttgaccagcaggaagtgaagaagatattctatgggagctttcataaggtacac
gtggccgtgagccacttcaagatcaaactctatctggactgtaagaaaatagctgagaaa
cccatcaacactgtgggcagcatctccactgctggcttcatcatgctgggaaaagtgacc
aggaccagaggacccaggagcgggtctgcatcgttccagctgcagtctttgcagatcacg
tgcagcagcacaggggcagaggaagacagatgctgtgatctccctgcactgagggatgag
gagacctgcccttccttagctcctgcctgctcttgttcttctggccgcccgggcttgcca
ggacctccagggccccctggcagccctgggaggagaggaccacaaggcgagcagggagag
ccaggacccaagggtgaaccaggcccacctggacaagtagggccagagggtcctagtggc
cagcaaggctctcccggttcccaaggaatcacagtgcagggtcctgtgggaccaccagga
attaaaggagagaaaggagacactggaagtcctggcctgcagggcattcccggtgtgcag
ggagctccaggaagggatggtcttcaaggtgcaaagggggtgaggggactagaaggcaca
gccgggcctccaggacctcctggaccaaggggtttccaaggagtgacaggctcccgaggc
agcagtggagagaagggacctccaggtgatgttggaccaacagggctgcctggtccaaaa
ggagaaagaggagagaaaggtgaaccacagtccttggccacaatttaccagctcgtgagt
caggcttgtgagcggatgatccaaactcatgtgttgaaatttgactcattcattcatgaa
catgccaggaagccagttcctatttgggaagaaaggttaaaaccaggagaaccaggacca
ccaggtcctccaggtccccctgggagcaatggagaaagaggagaaagtggcatccctgga
cagccaggcaaagatgggtatcctggagaaagaggtgccccagggcccaaaggagaaaaa
gggatgtctggagccagtgaagaagggatccaaggacccagaggcagaacaggcccacca
ggagaagttgtgctggggaaaccaggtccgaagggttaccctgggaatgttggtcctcaa
ggttttcccggtgttagagggcagcctgggcagtctggatatccagggggttgtgatatt
tctggatgttatggagcagaaaggagagatttcatcccctga
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