Streptomyces hawaiiensis: CEB94_34285
Help
Entry
CEB94_34285 CDS
T06917
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shaw
Streptomyces hawaiiensis
Pathway
shaw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CEB94_34285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shaw03400
]
CEB94_34285
Enzymes [BR:
shaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CEB94_34285
DNA repair and recombination proteins [BR:
shaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CEB94_34285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QCD59307
UniProt:
A0A6G5RP14
LinkDB
All DBs
Position
7396602..7397528
Genome browser
AA seq
308 aa
AA seq
DB search
MSGADGTRKVRAGRRTVEVHRPDKVLFPGGDAKEYTKGDLVDFYRAVAPFMLPHLRGRPL
MLERHPDGIEGPTFMQKNTPEHYPEWIPRVEVAKEGGTVRHTVCDDTPTLLYLADQASIT
LHRWLSRADSVDHPDRLVFDLDPWGDDFEAVREAARLLGELLDELELPSALMTTGSRGLH
VIVPLNGRHDFDEVRAFARDVADQLAAAHPDRLTTAARKKERGERLYLDIQRNAYAQTAV
APYTVRPRPGAPVATPLTWGQLDDPELHARRWTIADAVEQARTNPWSGLLNRGRALGPAR
RRLNALRG
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggcgccgacggcacgcgcaaggtgcgggcgggccgccgcacggtggaggtgcac
cggccggacaaggtgctcttccccggcggcgacgccaaggagtacaccaagggcgacctg
gtggacttctaccgggccgtcgcgcccttcatgctgccgcacctgcgcggccggcccctg
atgctggagcggcacccggacggcatcgagggcccgacgttcatgcagaagaacaccccg
gagcactacccggagtggatcccccgggtcgaagtggccaaggagggcggcaccgtccgc
cacaccgtctgcgacgacaccccgacccttctctacctggccgaccaggcgagcatcacc
ctgcaccgctggctgtcccgcgcggacagcgtcgaccacccggaccggctggtgttcgac
ctcgacccgtggggggacgacttcgaggccgtccgggaggccgcccggctgctcggggag
ctgctcgacgagttggagctgccctcggcgctgatgaccaccggctcgcgcgggctgcat
gtgatcgtgccgctgaacggacggcacgacttcgacgaggtgcgcgccttcgcccgggac
gtcgccgaccagctcgccgcggcccatcccgaccggctcaccaccgccgctcgcaagaag
gagcgcggtgagcggctctatctcgacatccagcgcaacgcctacgcccagaccgccgtc
gcgccctacacggtccggccccgcccgggtgccccggtggccacccccctcacctggggc
cagctggacgacccggagctgcacgcccgccgctggaccatcgccgacgccgtcgagcag
gcccgcaccaacccctggtcaggcctgctgaaccgcggccgggcgctgggaccggcccgg
cggcgactgaacgccctgcgtggctga
DBGET
integrated database retrieval system