Shewanella sp. WE21: CKQ84_00890
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Entry
CKQ84_00890 CDS
T05404
Name
(GenBank) transcriptional regulator
KO
K03566
LysR family transcriptional regulator, glycine cleavage system transcriptional activator
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shew03000
]
CKQ84_00890
Transcription factors [BR:
shew03000
]
Prokaryotic type
Helix-turn-helix
LysR family
CKQ84_00890
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
HTH_5
Motif
Other DBs
NCBI-ProteinID:
AVI64549
UniProt:
A0A2R3EQ26
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All DBs
Position
complement(220339..221250)
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AA seq
303 aa
AA seq
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MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL
LLTEEGQSYFLDIKDIFIQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKN
PDIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPL
SKPSDLKYHTLLHDMNRHDWQAWFRQCGITDINVNQGPIFSHSSLVLQAAAHGQGVALGY
SVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLDMFAEESRSEL
LPG
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagacgattaccaccgcttaatgcggttaaggcttttgaggcagccgcgcggcat
ttgagctttacgcgggcagcggaagaattgtttgttacacaggctgcggtgagccatcaa
ataaaggcattagaagatttcctcggattaaaattatttcgtcgaaagaaccgttctttg
ctattaaccgaagaagggcaaagctattttctcgacatcaaagatatctttattcagctt
gccgatgctaccgacagattactcgcccgcagtgcgattggttcgctgacagtcagtatg
tcacccagttttgcgattcaatggctagtgccacgcttggctaaattcagtgagaaaaat
cccgatatcgatgtgcgaattaaggccgttgataccgaagcgagttcattaaccgatgat
gtggatgtggctatttattatggcttaggtaattggcccgggctacgtgcagataagctc
agaaacgaagtgcttattcccgtatgttcgcccatgttgctcaacggtcctaaaccactc
tcaaaaccgagcgatttaaagtatcacacgttattacatgatatgaatcgtcacgattgg
caggcgtggtttaggcaatgtggcattaccgatattaatgtgaatcaaggacctattttc
agtcattcgtctttggtattgcaggcggcagcccacggtcaaggggttgccctgggttac
agcgtgctggcacgccccgatattaaagctgggcggcttgtgtgcccattccaagaagtc
ttggtcagtaaagatgcttattacttagtttgccagcaaaaccatgctgaactgggtaaa
gtggtggcgtttcgtgaatggatgttagacatgtttgccgaggagtctcgcagtgagttg
ttgcccggataa
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